Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 3.5e-62 241.5 127 100.0
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 4.9e-56 221.1 127 92.9
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 1.9e-55 219.2 124 91.1
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 2.7e-54 215.3 127 85.8
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 81.9
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 82.7
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 81.9
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 81.9
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 82.7
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 83.5
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 81.1
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 81.9
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 3.6e-51 204.9 127 81.9
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 81.1
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 6.2e-51 204.1 127 81.9
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 1.1e-50 203.4 127 80.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 80.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.4e-50 203.0 127 81.9
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.4e-50 203.0 128 82.0
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.8e-50 202.6 127 80.3
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 1.8e-50 202.6 127 81.1
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 1.8e-50 202.6 127 80.3
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 80.3
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 80.3
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 81.9
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 81.9
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 2.4e-50 202.2 127 80.3
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 80.3
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 81.0
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 4.0e-50 201.4 127 81.1
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 4.0e-50 201.4 128 81.2
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 5.2e-50 201.1 128 82.0
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 5.2e-50 201.1 127 81.1
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 6.9e-50 200.7 128 80.5
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 79.5
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 79.5
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 80.3
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 79.5
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 79.5
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.5e-49 199.5 127 78.7
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 2.0e-49 199.1 128 80.5
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 2.6e-49 198.7 124 80.6
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 79.5
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 78.7
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 78.7
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 79.5
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.6e-49 198.7 126 78.6
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 3.4e-49 198.4 123 82.1
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.4e-49 198.4 127 78.0
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.4e-49 198.4 127 79.5
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 5.8e-49 197.6 125 80.0
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 5.8e-49 197.6 127 80.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 7.6e-49 197.2 123 81.3
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 78.0
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.2e-48 195.7 127 78.0
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 3.8e-48 194.9 126 77.8
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 4.9e-48 194.5 129 80.6
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 4.9e-48 194.5 127 77.2
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.4e-48 194.1 129 76.7
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 1.1e-47 193.4 126 76.2
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.4e-47 193.0 129 77.5
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.4e-47 192.2 127 77.2
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 3.2e-47 191.8 124 78.2
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 3.2e-47 191.8 125 76.0
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 4.2e-47 191.4 127 75.6
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 9.3e-47 190.3 126 76.2
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.2e-46 189.9 127 77.2
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 1.2e-46 189.9 126 75.4
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.1e-46 189.1 127 74.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.7e-46 188.7 129 76.0
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 3.5e-46 188.3 126 75.4
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.0e-46 187.6 129 75.2
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 7.8e-46 187.2 129 74.4
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 1.0e-45 186.8 128 76.6
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 1.3e-45 186.4 129 73.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.7e-45 186.0 127 76.4
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.7e-45 186.0 127 74.8
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 2.3e-45 185.7 122 76.2
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 2.3e-45 185.7 126 73.8
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 3.0e-45 185.3 124 77.4
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.9e-45 184.9 127 75.6
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 3.9e-45 184.9 129 72.9
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 3.9e-45 184.9 126 73.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 5.1e-45 184.5 127 74.8
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.5e-44 183.0 127 72.4
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 4.3e-44 181.4 130 73.1
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 7.3e-44 180.6 122 73.8
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 1.6e-43 179.5 130 72.3
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 2.1e-43 179.1 131 71.8
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 2.1e-43 179.1 131 71.0
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 2.1e-43 179.1 131 71.8
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.8e-43 178.7 122 73.8
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 2.8e-43 178.7 125 71.2
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 2.8e-43 178.7 122 73.8
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.8e-43 178.7 126 70.6
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 4.8e-43 177.9 125 72.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 4.8e-43 177.9 131 71.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.4e-42 176.4 131 71.0
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 6.9e-42 174.1 127 68.5
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 6.9e-42 174.1 130 69.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 6.9e-42 174.1 127 71.7
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 9.0e-42 173.7 118 72.9
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 1.2e-41 173.3 118 73.7
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 1.5e-41 172.9 118 72.9
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 7.6e-41 170.6 130 67.7
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 2.2e-40 169.1 127 69.3
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 2.2e-40 169.1 127 69.3
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 2.9e-40 168.7 127 70.9
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 1.1e-39 166.8 127 67.7
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 2.4e-39 165.6 129 69.0
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 9.3e-39 163.7 147 61.2
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 2.1e-38 162.5 129 68.2
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 2.1e-38 162.5 129 68.2
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 66.1
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 7.4e-36 154.1 127 64.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.0e-34 147.1 161 52.8
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.5e-33 146.4 127 58.3
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 2.6e-33 145.6 127 60.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 1.9e-31 139.4 86 77.9
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 4.2e-31 138.3 127 58.3
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.3e-29 133.3 87 77.0
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 2.5e-28 129.0 106 66.0
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 9.6e-28 127.1 87 72.4
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 2.8e-27 125.6 133 52.6
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 7.6e-25 117.5 87 69.0
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.6e-19 99.8 120 43.3
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 4.1e-18 95.1 118 46.6
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 2.5e-15 85.9 121 43.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.1e-14 82.8 61 67.2
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 8.8e-13 77.4 46 80.4
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 8.2e-11 70.9 40 82.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 1.1e-10 70.5 40 85.0
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 8.5e-08 60.8 41 73.2
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 5.5e-07 58.2 89 41.6
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 9.4e-07 57.4 31 83.9


User provided reference genes

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