Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 0.0e+00 1253.8 616 100.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 0.0e+00 1177.2 606 94.9
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 5.4e-302 1040.4 608 83.4
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.5e-296 1022.3 644 80.0
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.5e-248 861.7 609 68.0
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 6.1e-245 850.9 603 66.3
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.1e-241 840.1 604 68.0
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.7e-240 835.5 609 66.8
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.0e-239 833.6 607 65.2
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 6.6e-239 830.9 609 66.8
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.5e-238 829.7 609 66.0
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.9e-238 829.3 609 66.2
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.3e-238 828.6 609 66.0
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.0e-236 823.5 609 65.8
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 9.8e-235 817.0 609 65.5
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 3.7e-234 815.1 608 64.5
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.8e-233 812.8 609 63.4
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.8e-233 812.8 607 63.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 4.1e-233 811.6 607 63.9
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 4.1e-233 811.6 609 63.7
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 5.4e-233 811.2 607 63.6
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 7.0e-233 810.8 606 64.5
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.6e-232 809.7 607 63.9
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 2.0e-232 809.3 608 64.0
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 2.7e-232 808.9 607 63.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 3.5e-232 808.5 583 66.2
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 4.6e-232 808.1 603 65.0
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.0e-231 807.0 602 63.3
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.0e-231 807.0 607 63.6
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.7e-231 806.2 602 64.5
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 8.6e-231 803.9 607 63.9
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.9e-230 802.7 608 63.8
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.9e-230 802.7 609 63.4
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 4.3e-230 801.6 608 63.8
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 2.1e-229 799.3 605 62.8
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.0e-228 797.0 607 63.4
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 3.1e-228 795.4 607 61.9
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.5e-227 793.1 607 63.3
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.0e-227 792.7 607 62.9
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 4.4e-227 791.6 609 62.2
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 2.9e-226 788.9 609 62.6
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 3.7e-226 788.5 588 64.5
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 1.9e-225 786.2 609 62.7
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 4.1e-225 785.0 604 62.7
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.7e-224 782.3 606 62.2
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 6.0e-224 781.2 607 62.3
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 7.8e-224 780.8 606 61.7
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.3e-223 780.0 607 61.6
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.0e-223 778.9 606 61.6
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.6e-223 777.7 607 62.1
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 9.5e-222 773.9 609 61.4
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 3.6e-221 771.9 602 62.0
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.7e-221 771.5 606 61.7
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.1e-220 770.4 607 61.8
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.4e-220 770.0 609 61.7
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 2.3e-220 769.2 609 61.7
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 3.1e-220 768.8 604 62.3
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 4.0e-220 768.5 606 61.2
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.5e-219 766.5 607 61.1
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 3.4e-219 765.4 609 60.8
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.4e-219 765.0 611 61.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.3e-218 763.5 614 59.4
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 2.2e-218 762.7 607 60.0
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 2.9e-218 762.3 606 60.4
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.9e-218 762.3 606 61.2
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 7.1e-217 757.7 600 61.5
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.6e-216 756.5 606 60.7
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.1e-216 756.1 610 60.5
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 3.3e-214 748.8 608 60.4
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.2e-210 736.1 583 60.9
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 2.9e-210 735.7 672 55.7
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 3.7e-210 735.3 583 61.1
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.0e-207 725.7 609 58.0
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 6.6e-207 724.5 606 58.6
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.5e-206 723.4 609 57.8
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 7.3e-206 721.1 537 64.8
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.6e-200 703.4 498 67.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.9e-193 679.9 586 56.1
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.9e-193 679.9 636 53.9
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.6e-192 676.8 615 55.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 4.3e-190 668.7 485 67.0
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 2.4e-188 662.9 582 57.2
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.0e-188 662.1 495 64.4
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 3.8e-186 655.6 537 61.1
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 4.6e-184 648.7 607 54.5
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 2.3e-183 646.4 610 54.1
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 9.0e-180 634.4 604 51.0
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.9e-177 626.7 611 53.5
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.3e-172 608.6 454 63.2
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 9.0e-172 607.8 608 52.1
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.5e-169 598.6 456 63.8
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.6e-160 570.5 502 55.6
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.8e-159 567.0 700 45.4
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 5.7e-150 535.4 610 48.7
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.2e-149 533.5 502 55.4
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 8.2e-149 531.6 607 47.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.8e-148 530.4 502 55.4
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.4e-143 514.2 607 45.0
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 4.5e-139 499.2 616 43.5
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.5e-134 484.2 582 43.5
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 3.1e-132 476.5 606 43.7
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 5.7e-118 429.1 299 67.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.4e-116 424.5 381 57.7
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.1e-113 414.8 635 40.9
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 2.8e-112 410.2 656 38.4
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.4e-110 403.3 542 40.8
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 8.3e-109 398.7 482 43.6
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.8e-103 380.9 303 60.4
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.1e-103 380.2 289 63.7
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 5.8e-102 375.9 347 55.3
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.4e-93 345.9 470 40.9
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.5e-81 307.4 238 63.9
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.6e-56 224.9 635 29.3
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.5e-54 216.9 186 60.2
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.0e-50 205.7 144 68.8
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 9.7e-49 199.1 262 40.8
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 2.2e-48 198.0 322 39.1
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.3e-48 196.4 125 65.6
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 8.5e-45 186.0 325 33.5
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.1e-42 176.8 125 68.0
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.0e-37 162.5 125 65.6
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.6e-35 154.1 105 69.5
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-34 151.8 114 56.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 9.7e-33 146.0 100 67.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.7e-32 145.2 113 60.2
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.2e-29 134.8 103 60.2
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.8e-26 125.2 164 45.7
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.2e-25 122.5 143 46.2
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.5e-12 79.0 66 50.0
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.6e-11 75.5 61 50.8
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.5e-09 68.9 60 53.3
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 7.8e-06 56.6 37 62.2
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 7.8e-06 56.6 37 62.2


User provided reference genes

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