Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004363.2 Cucumis melo HOM05D006905 ORTHO05D003398 4.5e-80 301.2 153 100.0
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 3.4e-72 275.0 150 92.7
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 1.5e-62 243.0 150 80.7
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 2.4e-41 172.6 146 62.3
ClCG02G016440 Citrullus lanatus HOM05D006905 ORTHO05D003398 3.1e-41 172.2 134 69.4
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 1.6e-40 169.9 144 61.8
Haze_04329 Corylus avellana HOM05D006905 ORTHO05D003398 6.6e-39 164.5 158 59.5
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 4.3e-38 161.8 159 59.1
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 1.6e-37 159.8 160 58.1
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 2.8e-37 159.1 153 56.9
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 6.1e-37 157.9 152 55.3
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 1.8e-36 156.4 128 61.7
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 1.8e-36 156.4 136 61.0
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 2.3e-36 156.0 153 58.8
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 4.0e-36 155.2 133 60.9
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 6.8e-36 154.5 143 56.6
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 1.2e-35 153.7 128 57.0
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 1.5e-35 153.3 167 53.3
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 2.6e-35 152.5 154 53.9
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 3.4e-35 152.1 160 55.6
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 1.7e-34 149.8 156 51.9
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 2.2e-34 149.4 157 53.5
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 2.9e-34 149.1 154 52.6
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 2.9e-34 149.1 134 58.2
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 3.7e-34 148.7 135 56.3
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 6.4e-34 147.9 161 54.0
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 8.3e-34 147.5 134 57.5
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 1.1e-33 147.1 129 60.5
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 1.1e-33 147.1 129 60.5
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.4e-33 146.7 155 52.9
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 1.8e-33 146.4 157 51.0
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 5.4e-33 144.8 122 60.7
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 5.4e-33 144.8 135 57.8
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 9.2e-33 144.1 161 52.8
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 2.7e-32 142.5 137 51.1
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 3.5e-32 142.1 118 60.2
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 4.6e-32 141.7 157 51.0
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 4.6e-32 141.7 143 55.9
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 5.9e-32 141.4 114 63.2
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 1.0e-31 140.6 155 52.9
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.3e-31 140.2 156 51.3
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 1.7e-31 139.8 145 53.1
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 1.7e-31 139.8 150 54.7
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 2.3e-31 139.4 113 63.7
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 2.3e-31 139.4 153 52.3
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 5.0e-31 138.3 143 50.3
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 5.0e-31 138.3 156 50.6
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 5.0e-31 138.3 118 58.5
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 6.6e-31 137.9 153 50.3
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 8.6e-31 137.5 129 55.0
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 8.6e-31 137.5 142 53.5
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 1.1e-30 137.1 118 58.5
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 1.5e-30 136.7 151 51.0
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.9e-30 136.3 113 62.8
Rhsim07G0175500 Rhododendron simsii HOM05D006905 ORTHO05D003398 2.5e-30 136.0 160 52.5
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 3.3e-30 135.6 118 56.8
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 4.3e-30 135.2 118 56.8
Glyma.20G227801 Glycine max HOM05D006905 ORTHO05D003398 5.6e-30 134.8 117 59.0
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 5.6e-30 134.8 151 52.3
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 5.6e-30 134.8 123 56.1
arahy.Tifrunner.gnm1.ann1.N7GLTS Arachis hypogaea HOM05D006905 ORTHO05D003398 7.3e-30 134.4 115 58.3
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 7.3e-30 134.4 168 47.6
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 1.2e-29 133.7 151 50.3
Aa31LG5G15280 Aethionema arabicum HOM05D006905 ORTHO05D003398 2.1e-29 132.9 138 50.0
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 2.8e-29 132.5 150 48.7
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 6.2e-29 131.3 115 55.7
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 1.8e-28 129.8 129 51.9
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 2.3e-28 129.4 144 50.7
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 5.2e-28 128.3 153 47.7
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 8.9e-28 127.5 130 52.3
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 8.9e-28 127.5 137 52.6
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 1.2e-27 127.1 152 47.4
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 2.0e-27 126.3 138 48.6
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 4.4e-27 125.2 116 53.4
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 7.5e-27 124.4 139 47.5
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 9.8e-27 124.0 154 48.1
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 1.1e-25 120.6 131 48.9
BcaNung06537 Brassica carinata HOM05D006905 ORTHO05D003398 3.2e-25 119.0 132 49.2
C05p62430 Brassica napus HOM05D006905 ORTHO05D003398 3.2e-25 119.0 132 49.2
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 5.4e-25 118.2 125 51.2
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 5.4e-25 118.2 107 51.4
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 9.2e-25 117.5 136 49.3
SalBow8G0693 Salvia bowleyana HOM05D006905 ORTHO05D003398 9.2e-25 117.5 86 59.3
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 2.0e-24 116.3 145 46.2
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 1.9e-22 109.8 126 50.8
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.6e-21 106.7 142 44.4
Psat6g147000 Pisum sativum HOM05D002360 ORTHO05D006297 3.6e-21 105.5 84 59.5
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 3.6e-21 105.5 150 40.0
Gohir.A08G226300 Gossypium hirsutum HOM05D006905 ORTHO05D003398 8.9e-20 100.9 138 47.8
FAN05G4190 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.2e-19 100.5 155 43.2
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 4.4e-19 98.6 109 47.7
Sabra13G0035600 Salix brachista HOM05D006905 ORTHO05D003398 4.4e-19 98.6 164 42.7
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 7.5e-19 97.8 65 69.2
MELO3C033271.2 Cucumis melo HOM05D020306 ORTHO05D003398 1.3e-18 97.1 96 58.3
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 2.9e-18 95.9 121 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 8.3e-18 94.4 117 42.7
MELO3C030760.2 Cucumis melo HOM05D020306 ORTHO05D003398 5.4e-17 91.7 68 72.1
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.0e-15 87.4 67 55.2
Potri.013G037050 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.3e-15 87.0 114 43.9
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.3e-15 86.3 66 54.5
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 3.9e-15 85.5 66 54.5
Cc02_g31660 Coffea canephora HOM05D006905 ORTHO05D003398 5.1e-15 85.1 54 70.4
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 2.2e-10 69.7 122 35.2
MELO3C033648.2 Cucumis melo HOM05D020306 ORTHO05D003398 1.4e-09 67.0 42 78.6
Gohir.A01G104050 Gossypium hirsutum HOM05D006905 ORTHO05D003398 9.2e-09 64.3 80 47.5
MELO3C034095.2 Cucumis melo HOM05D020306 ORTHO05D003398 2.3e-07 59.7 34 88.2
MELO3C015006.2 Cucumis melo HOM05D020306 ORTHO05D003398 5.1e-07 58.5 34 85.3
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 5.1e-07 58.5 92 33.7
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 1.1e-06 57.4 112 33.0
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 5.6e-06 55.1 110 30.0
MELO3C034508.2 Cucumis melo HOM05D020306 ORTHO05D003398 5.6e-06 55.1 51 64.7


User provided reference genes

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