Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004280.2 Cucumis melo HOM05D008052 ORTHO05D010155 7.0e-122 440.7 226 100.0
CsaV3_2G005120 Cucumis sativus L. HOM05D008052 ORTHO05D000003 7.5e-108 394.0 220 91.8
ClCG02G015920 Citrullus lanatus HOM05D008052 ORTHO05D010155 2.7e-97 359.0 226 83.6
Sed0020219 Sechium edule HOM05D008052 ORTHO05D010155 4.0e-77 292.0 210 72.4
Sed0004902 Sechium edule HOM05D008052 ORTHO05D010155 1.9e-66 256.5 221 63.8
Prupe.6G328200 Prunus persica HOM05D008052 ORTHO05D010155 2.3e-32 143.3 230 40.4
CANSAT54G0621 Cannabis sativa HOM05D008052 ORTHO05D010155 1.2e-28 131.0 173 42.8
FAN05G4790 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-27 127.1 209 38.8
Thecc.05G305400 Theobroma cacao HOM05D008052 ORTHO05D010155 1.7e-27 127.1 220 40.9
FAN05G1355 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-27 126.7 209 38.8
Sabra13G0025900 Salix brachista HOM05D008052 ORTHO05D010155 5.5e-26 122.1 224 36.6
Potri.013G024500 Populus trichocarpa HOM05D008052 ORTHO05D010155 1.6e-25 120.6 224 36.2
TAR633G0175 Trochodendron aralioides HOM05D008052 ORTHO05D010155 4.7e-25 119.0 173 41.6
FvH4_6g05580 Fragaria vesca HOM05D008052 ORTHO05D010155 8.0e-25 118.2 234 35.9
Duzib106G0088 Durio zibethinus HOM05D008052 ORTHO05D010155 1.0e-24 117.9 201 40.8
Ciclev10003106m.g Citrus clementina HOM05D008052 ORTHO05D010155 2.3e-24 116.7 219 36.5
TWI56G0838 Tripterygium wilfordii HOM05D008052 ORTHO05D010155 3.0e-24 116.3 203 37.4
Gorai.007G342900 Gossypium raimondii HOM05D008052 ORTHO05D010155 6.7e-24 115.2 217 38.7
FAN14G3020 Fragaria x ananassa HOM05D008052 ORTHO05D010155 1.1e-23 114.4 180 40.0
TAR362G0883 Trochodendron aralioides HOM05D008052 ORTHO05D010155 5.7e-23 112.1 182 40.7
Gohir.A11G296000 Gossypium hirsutum HOM05D008052 ORTHO05D010155 1.3e-22 110.9 217 37.8
Cpa.g.sc48.31 Carica papaya HOM05D008052 ORTHO05D010155 6.3e-22 108.6 198 39.4
Gohir.D11G310900 Gossypium hirsutum HOM05D008052 ORTHO05D010155 6.3e-22 108.6 215 38.1
Manes.09G165300 Manihot esculenta HOM05D008052 ORTHO05D010155 6.3e-22 108.6 178 40.4
MD12G1221400 Malus domestica HOM05D008052 ORTHO05D010155 8.2e-22 108.2 212 36.8
RcHm_v2.0_Chr3g0454361 Rosa chinensis HOM05D008052 ORTHO05D010155 8.2e-22 108.2 178 37.1
QL02p094100 Quercus lobata HOM05D008052 ORTHO05D010155 9.1e-21 104.8 148 42.6
Haze_04211 Corylus avellana HOM05D008052 ORTHO05D010155 2.0e-20 103.6 148 43.2
MD04G1207300 Malus domestica HOM05D008052 ORTHO05D010155 3.5e-20 102.8 222 35.6
PGR031G3742 Punica granatum HOM05D008052 ORTHO05D010155 2.2e-19 100.1 203 38.9
FAN14G1634 Fragaria x ananassa HOM05D008052 ORTHO05D010155 6.5e-19 98.6 182 36.3
Nn4g26221 Nelumbo nucifera HOM05D008052 ORTHO05D010155 6.5e-19 98.6 197 35.0
Sp2g20660 Schrenkiella parvula HOM05D008052 ORTHO05D010155 6.5e-19 98.6 213 33.8
Thhalv10005402m.g Eutrema salsugineum HOM05D008052 ORTHO05D010155 9.4e-18 94.7 199 32.2
SalBow3G2994 Salvia bowleyana HOM05D008052 ORTHO05D010155 9.4e-18 94.7 179 34.6
AT5G27440 Arabidopsis thaliana HOM05D008052 ORTHO05D010155 2.1e-17 93.6 175 37.1
MSTRG.28007 Avicennia marina HOM05D008052 ORTHO05D010155 2.7e-17 93.2 183 31.7
Migut.N01951 Erythranthe guttata HOM05D008052 ORTHO05D010155 4.7e-17 92.4 180 36.1
Cfa006565 Carpinus fangiana HOM05D008052 ORTHO05D010155 8.0e-17 91.7 142 39.4
Nitab4.5_0004570g0050 Nicotiana tabacum HOM05D008052 ORTHO05D010155 1.8e-16 90.5 219 35.6
THA.LOC104802806 Tarenaya hassleriana HOM05D008052 ORTHO05D010155 4.0e-16 89.4 166 38.6
CiPaw.07G021600 Carya illinoinensis HOM05D008052 ORTHO05D010155 6.8e-16 88.6 141 40.4
CARHR186050 Cardamine hirsuta HOM05D008052 ORTHO05D010155 1.5e-15 87.4 208 29.3
COL.COLO4_13498 Corchorus olitorius HOM05D008052 ORTHO05D010155 2.0e-15 87.0 222 34.7
Atru.chr2.447 Acer truncatum HOM05D008052 ORTHO05D010155 2.6e-15 86.7 235 34.9
Nitab4.5_0000743g0110 Nicotiana tabacum HOM05D008052 ORTHO05D010155 2.6e-15 86.7 212 34.9
Cfa012653 Carpinus fangiana HOM05D008052 ORTHO05D010155 5.7e-15 85.5 87 50.6
Cc02_g33610 Coffea canephora HOM05D008052 ORTHO05D010155 1.7e-14 84.0 226 35.0
A06p37460 Brassica napus HOM05D008052 ORTHO05D010155 2.2e-14 83.6 208 29.8
BraA06t26670Z Brassica rapa HOM05D008052 ORTHO05D010155 2.2e-14 83.6 208 29.8
Sopen12g003550 Solanum pennellii HOM05D008052 ORTHO05D010155 2.2e-14 83.6 187 36.9
Sc09g0003250 Simmondsia chinensis HOM05D008052 ORTHO05D010155 4.8e-14 82.4 186 33.9
C07p40900 Brassica napus HOM05D008052 ORTHO05D010155 1.8e-13 80.5 157 35.0
PGSC0003DMG400000290 Solanum tuberosum HOM05D008052 ORTHO05D010155 1.2e-12 77.8 212 33.5
Cfa006570 Carpinus fangiana HOM05D008052 ORTHO05D010155 3.5e-12 76.3 148 37.2
BcaNung02451 Brassica carinata HOM05D008052 ORTHO05D010155 7.7e-12 75.1 179 32.4
BolC7t44618H Brassica oleracea HOM05D008052 ORTHO05D010155 7.7e-12 75.1 179 32.4
PSO170G6008 Papaver somniferum HOM05D008052 ORTHO05D010155 1.7e-11 73.9 201 34.3
Carub.0006s2509 Capsella rubella HOM05D008052 ORTHO05D010155 2.2e-11 73.6 221 29.9
DCAR_022183 Daucus carota HOM05D008052 ORTHO05D010155 2.5e-10 70.1 132 40.2
Phvul.007G181200 Phaseolus vulgaris HOM05D014832 ORTHO05D016666 8.0e-09 65.1 178 33.1
Ah.05g168010 Amaranthus hybridus HOM05D038607 ORTHO05D010155 2.3e-08 63.5 199 33.2
AL6G39570 Arabidopsis lyrata HOM05D008052 ORTHO05D010155 3.0e-08 63.2 156 30.1
Ah.06g189190 Amaranthus hybridus HOM05D038607 ORTHO05D010155 5.2e-08 62.4 199 32.7
Haze_04214 Corylus avellana HOM05D008052 ORTHO05D010155 8.8e-08 61.6 106 40.6
Lj5g0006973 Lotus japonicus HOM05D014832 ORTHO05D016666 8.8e-08 61.6 166 33.1
Solyc12g008610.3 Solanum lycopersicum HOM05D008052 ORTHO05D010155 2.6e-07 60.1 110 36.4
BcaNung04372 Brassica carinata HOM05D008052 ORTHO05D010155 3.4e-07 59.7 102 38.2
PSO302G0085 Papaver somniferum HOM05D008052 ORTHO05D010155 5.7e-07 58.9 203 31.5
SGA_v2.0_scaffold81G26084 Striga asiatica HOM05D008052 ORTHO05D010155 7.5e-07 58.5 159 30.2
Psat0s1377g0280 Pisum sativum HOM05D014832 ORTHO05D016666 9.8e-07 58.2 217 29.0
Cfa021083 Carpinus fangiana HOM05D008052 ORTHO05D010155 1.7e-06 57.4 55 50.9
Glyma.10G155700 Glycine max HOM05D014832 ORTHO05D016666 1.7e-06 57.4 186 31.2
Glyma.20G232600 Glycine max HOM05D014832 ORTHO05D016666 2.8e-06 56.6 181 30.4


User provided reference genes

Program Settings