Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 3.3e-181 638.6 431 100.0
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 8.0e-167 590.9 432 93.3
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 7.1e-131 471.5 463 74.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 8.9e-126 454.5 387 80.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 8.7e-105 384.8 425 58.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 5.6e-104 382.1 424 57.3
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.1e-102 377.9 423 57.0
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.4e-102 377.5 425 53.6
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.8e-102 377.1 439 55.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.0e-100 371.3 424 55.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 3.8e-100 369.4 425 58.4
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.9e-100 369.0 411 56.7
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.9e-100 369.0 411 56.7
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-99 366.7 411 56.4
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.6e-98 364.0 445 53.3
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.7e-98 363.2 424 55.4
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.3e-97 360.9 422 56.2
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.9e-97 359.4 446 53.1
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 5.1e-97 359.0 427 54.8
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.1e-96 357.8 424 53.5
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-96 357.8 446 52.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.4e-94 350.9 444 52.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-94 350.5 421 55.3
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 3.1e-94 349.7 434 53.9
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 4.0e-94 349.4 424 54.7
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.3e-94 349.0 422 54.5
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-93 347.8 443 53.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.5e-93 347.4 383 57.4
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.5e-93 347.4 447 53.0
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 4.5e-93 345.9 450 51.6
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.8e-93 345.5 423 54.6
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-92 343.2 306 66.7
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.8e-92 342.8 389 57.1
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.0e-92 342.4 429 54.3
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.1e-91 341.3 374 56.7
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-91 341.3 374 56.7
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.2e-91 339.7 462 49.4
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 7.1e-91 338.6 422 53.6
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.1e-90 337.0 428 63.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.7e-90 336.7 446 49.6
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.9e-89 332.8 428 60.7
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.5e-88 330.9 403 52.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 3.3e-88 329.7 448 49.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 4.3e-88 329.3 429 59.2
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.7e-88 328.2 425 56.0
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.6e-87 327.4 441 50.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 3.7e-87 326.2 448 49.3
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 6.3e-87 325.5 445 50.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.4e-86 324.3 423 51.3
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.8e-86 323.9 412 51.7
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.4e-86 323.6 426 50.9
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.4e-86 323.6 466 47.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 6.9e-86 322.0 440 52.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.5e-85 320.9 424 53.3
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.4e-85 319.7 289 61.6
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 7.7e-85 318.5 459 49.0
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.0e-84 318.2 307 61.2
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.9e-84 316.6 308 62.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.0e-84 315.8 307 59.6
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 8.5e-84 315.1 307 59.3
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.1e-83 314.7 307 59.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 4.2e-83 312.8 397 51.9
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 5.5e-83 312.4 426 50.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.2e-82 311.2 446 48.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.6e-82 310.8 426 50.7
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 2.1e-82 310.5 451 51.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.3e-80 302.8 431 52.7
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 9.7e-80 301.6 478 46.9
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.1e-78 298.1 425 49.6
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.1e-78 298.1 428 49.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.1e-78 295.0 317 60.9
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 9.1e-78 295.0 429 48.0
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.6e-77 293.5 488 44.5
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.4e-77 293.1 312 60.6
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 7.7e-77 292.0 435 46.9
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.7e-76 290.8 302 57.6
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.2e-76 290.4 287 58.9
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 8.5e-76 288.5 314 56.1
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.5e-75 287.0 377 49.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 4.2e-75 286.2 430 49.8
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 4.2e-75 286.2 307 58.3
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.6e-74 284.3 428 48.1
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.1e-74 283.9 459 43.1
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.6e-74 283.1 472 42.4
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.0e-73 281.6 457 43.5
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 6.7e-73 278.9 485 42.9
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.5e-72 277.7 454 43.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.5e-72 277.7 484 43.2
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 2.6e-72 276.9 315 56.5
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 5.7e-72 275.8 433 43.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 4.8e-71 272.7 479 40.9
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 6.3e-71 272.3 460 43.7
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 4.1e-70 269.6 285 55.4
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 9.1e-70 268.5 266 58.3
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 5.9e-69 265.8 455 42.0
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 5.9e-69 265.8 455 42.0
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.2e-68 263.8 399 47.1
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.8e-68 263.1 441 44.7
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 8.5e-68 261.9 320 50.0
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.1e-67 261.5 387 50.4
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.5e-67 261.2 426 44.4
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 7.2e-67 258.8 481 43.7
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.6e-66 257.7 429 45.9
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.7e-66 256.9 365 48.8
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.0e-65 255.0 449 44.5
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 4.4e-64 249.6 311 49.5
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.1e-62 241.9 443 43.8
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.0e-60 238.4 312 51.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 5.5e-59 232.6 383 44.4
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 5.5e-59 232.6 432 42.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.0e-56 224.2 282 50.0
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.4e-56 223.0 354 50.0
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 4.4e-56 223.0 387 42.6
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.4e-54 217.2 424 41.0
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.9e-53 212.6 331 46.5
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.2e-52 210.7 289 49.8
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.2e-51 206.8 350 43.4
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 4.2e-51 206.5 271 48.7
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 6.8e-49 199.1 293 46.1
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 3.7e-47 193.4 316 46.2
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.0e-44 183.0 339 43.1
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.1e-43 181.8 309 45.0
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.6e-42 177.9 434 36.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.7e-39 167.9 149 63.1
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 2.4e-38 164.1 213 50.7
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 4.1e-38 163.3 305 42.3
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 5.0e-36 156.4 303 40.3
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.6e-32 144.1 178 52.2
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 5.0e-28 129.8 107 66.4
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 5.2e-25 119.8 422 34.8
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.4e-24 116.7 256 37.9
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 5.4e-22 109.8 84 70.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.0e-20 105.5 169 39.6
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.6e-20 102.8 71 71.8
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 7.3e-19 99.4 84 59.5
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.1e-18 95.9 65 73.8
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.1e-17 94.0 77 62.3
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 8.9e-17 92.4 64 70.3
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-16 91.7 86 59.3
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-16 91.3 67 65.7
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.9e-15 86.7 278 33.8
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 8.4e-15 85.9 199 38.2
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.2e-14 82.4 58 69.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.3e-12 78.6 109 50.5
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.9e-11 74.7 170 35.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 2.5e-11 74.3 102 44.1
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 5.4e-06 56.6 54 59.3
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 7.1e-06 56.2 54 59.3
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.3e-06 55.8 54 59.3
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.3e-06 55.8 54 59.3
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.3e-06 55.8 54 59.3
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 9.3e-06 55.8 54 59.3


User provided reference genes

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