Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.2e-175 619.8 314 100.0
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.8e-168 595.9 310 96.1
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.8e-160 569.3 313 92.7
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.4e-128 463.4 320 78.1
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 5.3e-120 434.9 317 71.9
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 5.5e-117 424.9 311 70.1
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.6e-116 423.3 316 71.5
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.8e-115 419.9 317 69.1
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 3.0e-115 419.1 316 70.3
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 3.0e-115 419.1 312 69.9
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.0e-115 419.1 313 70.6
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.0e-115 418.7 288 73.3
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 4.0e-115 418.7 315 70.2
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 5.2e-115 418.3 310 70.0
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 5.2e-115 418.3 310 70.0
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 4.8e-113 411.8 296 71.3
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 1.1e-112 410.6 316 69.6
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.1e-112 410.6 294 72.1
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.4e-112 410.2 298 70.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.4e-112 409.5 314 69.4
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 3.1e-112 409.1 326 67.8
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 4.1e-112 408.7 314 69.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.4e-112 408.3 295 71.2
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 9.1e-112 407.5 318 67.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 9.1e-112 407.5 311 69.5
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 2.0e-111 406.4 296 70.6
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.0e-111 406.4 313 67.7
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 2.7e-111 406.0 313 68.7
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 7.7e-111 404.4 289 72.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 1.3e-110 403.7 261 76.6
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.3e-110 403.7 312 68.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 2.2e-110 402.9 297 70.0
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 2.9e-110 402.5 259 77.2
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.9e-110 402.5 312 68.9
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 2.9e-110 402.5 313 68.4
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 6.5e-110 401.4 310 69.4
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.5e-109 400.2 316 69.3
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.9e-109 399.8 311 68.8
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.9e-109 399.8 310 68.4
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.5e-109 399.4 311 65.9
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.2e-109 399.1 261 76.2
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 3.2e-109 399.1 306 67.0
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 4.2e-109 398.7 302 69.2
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 7.2e-109 397.9 264 75.4
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 9.4e-109 397.5 316 66.8
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 1.2e-108 397.1 309 68.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 1.2e-108 397.1 309 68.3
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-108 396.7 319 67.4
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-108 396.7 319 67.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.6e-108 396.7 309 66.3
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 2.1e-108 396.4 313 66.8
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.7e-108 395.2 311 67.8
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.7e-108 395.2 311 67.8
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 8.0e-108 394.4 305 68.9
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.8e-107 393.3 293 68.9
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 3.0e-107 392.5 293 68.3
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 8.8e-107 391.0 291 69.8
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 8.8e-107 391.0 340 62.6
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.2e-106 390.6 313 66.5
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.2e-106 390.6 310 67.1
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 3.4e-106 389.0 302 67.2
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 3.4e-106 389.0 326 63.2
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 4.4e-106 388.7 286 69.2
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 9.8e-106 387.5 246 76.4
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.7e-105 386.7 314 65.9
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 2.2e-105 386.3 286 68.9
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.2e-105 386.3 332 64.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.2e-105 386.3 305 67.2
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 2.8e-105 386.0 313 65.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.3e-105 384.8 221 84.2
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 8.3e-105 384.4 315 65.1
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.1e-104 384.0 309 65.7
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 4.1e-104 382.1 270 71.5
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 7.0e-104 381.3 314 66.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 7.0e-104 381.3 304 66.8
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 7.7e-103 377.9 299 66.2
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.0e-102 377.5 301 64.8
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.9e-102 375.9 321 63.9
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.9e-102 375.9 316 63.9
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.9e-101 373.2 313 64.5
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 7.2e-101 371.3 286 65.7
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.0e-99 367.5 264 70.5
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 2.3e-99 366.3 317 63.4
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 4.0e-99 365.5 261 69.7
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 3.4e-98 362.5 234 76.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.7e-97 360.1 224 77.2
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.2e-97 359.8 264 69.7
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.1e-96 357.5 310 61.9
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 2.3e-91 339.7 302 61.3
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.2e-90 337.4 194 82.0
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 7.5e-90 334.7 299 63.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 1.6e-87 327.0 319 58.6
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.6e-87 327.0 229 74.2
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.1e-83 314.3 299 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 1.9e-77 293.5 263 55.5
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 3.6e-76 289.3 300 55.3
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.4e-72 277.3 321 46.7
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 7.1e-72 275.0 163 81.0
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.1e-68 263.5 218 61.0
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 3.2e-64 249.6 264 45.8
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 3.1e-59 233.0 190 55.3
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 9.9e-58 228.0 139 78.4
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.8e-52 209.9 153 66.7
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.4e-51 206.8 197 57.4
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.1e-51 206.5 110 87.3
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 3.8e-49 199.5 132 75.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-48 197.6 126 77.0
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-48 197.6 126 77.0
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.7e-44 183.0 132 68.9
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 5.5e-40 169.1 252 36.9
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 5.1e-38 162.5 309 34.0
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.9e-32 144.1 155 57.4
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.7e-31 140.2 104 70.2
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 6.1e-31 139.0 238 35.7
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 7.4e-21 105.5 92 62.0
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-19 101.3 53 84.9
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-19 100.9 191 38.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 3.6e-15 86.7 53 71.7
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.2e-12 77.4 49 71.4
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 1.0e-09 68.6 38 78.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.9e-09 67.0 138 42.0
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.7e-07 60.5 77 50.6
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.7e-07 60.5 77 50.6
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 3.6e-07 60.1 115 37.4
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.3e-06 57.4 34 70.6
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 8.8e-06 55.5 115 35.7


User provided reference genes

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