Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 2.7e-152 542.0 269 100.0
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 4.3e-142 508.1 267 94.4
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 8.3e-122 440.7 268 82.5
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 5.6e-118 427.9 267 82.4
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.6e-107 392.5 348 63.2
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 4.4e-107 391.7 267 74.5
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 3.2e-105 385.6 264 75.8
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 1.2e-104 383.6 271 73.4
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 2.1e-104 382.9 252 75.4
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 2.7e-104 382.5 263 73.0
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 4.6e-104 381.7 247 76.1
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 3.9e-103 378.6 263 73.4
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 5.1e-103 378.3 261 73.6
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 1.9e-102 376.3 268 72.0
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 2.5e-102 375.9 239 77.8
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 2.5e-102 375.9 264 73.1
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 4.3e-102 375.2 265 74.3
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 5.6e-102 374.8 239 77.4
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 2.1e-101 372.9 262 72.9
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.4e-100 370.2 271 72.0
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.4e-100 370.2 218 80.7
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 1.8e-100 369.8 228 78.9
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.4e-100 369.4 277 68.2
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 2.4e-100 369.4 272 72.8
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 4.0e-100 368.6 271 72.0
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 4.0e-100 368.6 245 76.3
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 5.3e-100 368.2 239 75.3
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 6.9e-100 367.9 267 70.0
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 6.9e-100 367.9 260 71.5
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 6.9e-100 367.9 260 73.1
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 9.0e-100 367.5 249 76.7
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 9.0e-100 367.5 213 84.0
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.2e-99 367.1 266 71.1
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 1.2e-99 367.1 268 72.4
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 1.2e-99 367.1 213 82.2
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 2.6e-99 365.9 272 71.3
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 3.4e-99 365.5 215 81.4
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 5.8e-99 364.8 219 79.9
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.3e-98 363.6 250 74.0
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 4.9e-98 361.7 278 69.4
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 3.2e-97 359.0 249 72.3
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 7.1e-97 357.8 247 75.3
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 9.3e-97 357.5 216 79.2
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 9.3e-97 357.5 220 77.7
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 4.6e-96 355.1 218 79.4
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 6.0e-96 354.8 296 64.9
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 7.9e-96 354.4 216 78.7
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 6.7e-95 351.3 270 68.5
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 8.7e-95 350.9 215 79.1
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.5e-94 350.1 282 66.0
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 1.9e-94 349.7 231 77.1
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 1.9e-94 349.7 217 78.8
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 1.9e-94 349.7 270 67.8
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 1.9e-94 349.7 216 78.7
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 2.5e-94 349.4 225 76.4
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 3.3e-94 349.0 255 71.4
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 9.6e-94 347.4 219 78.1
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 9.6e-94 347.4 219 78.1
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 1.6e-93 346.7 274 68.2
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.6e-93 346.7 213 78.9
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 2.8e-93 345.9 213 78.9
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 3.6e-93 345.5 253 69.2
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 6.2e-93 344.7 213 78.4
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 1.4e-92 343.6 223 75.8
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 3.1e-92 342.4 279 67.0
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 3.1e-92 342.4 223 75.3
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 4.0e-92 342.0 259 68.0
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 3.4e-91 339.0 215 75.8
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 3.4e-91 339.0 262 67.9
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.7e-90 336.7 255 65.5
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 2.9e-90 335.9 247 72.1
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 2.9e-90 335.9 205 76.1
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 4.9e-90 335.1 210 76.2
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 3.2e-89 332.4 205 79.5
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.1e-88 329.7 236 69.5
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 3.5e-88 328.9 267 65.2
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.3e-87 326.2 228 70.6
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 2.1e-85 319.7 179 83.2
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 1.1e-84 317.4 237 69.2
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 1.1e-84 317.4 218 72.0
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.3e-82 310.5 242 67.8
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 1.7e-82 310.1 261 62.8
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 2.2e-82 309.7 215 71.6
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 2.9e-82 309.3 259 63.7
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 6.5e-82 308.1 258 65.1
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.4e-81 307.0 234 66.2
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.9e-81 306.6 218 72.9
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.2e-81 305.4 175 82.9
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 8.7e-79 297.7 317 56.5
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 8.7e-79 297.7 210 71.4
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 3.7e-77 292.4 168 81.0
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 8.2e-77 291.2 185 77.3
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 8.5e-74 281.2 192 76.6
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 9.3e-73 277.7 194 74.7
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 5.1e-71 271.9 223 60.5
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 9.7e-70 267.7 175 78.9
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.4e-68 263.1 196 69.9
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 2.6e-67 259.6 210 62.9
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 1.1e-65 254.2 192 64.1
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 1.0e-63 247.7 186 63.4
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.8e-63 246.9 169 74.0
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 5.3e-60 235.3 273 53.5
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.2e-58 229.9 149 77.2
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 4.2e-57 225.7 208 54.3
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.4e-55 220.7 141 76.6
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 1.1e-54 217.6 179 58.1
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.0e-50 204.5 152 64.5
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 2.2e-50 203.4 117 82.9
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 5.5e-49 198.7 179 51.4
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 5.9e-43 178.7 183 52.5
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 8.5e-42 174.9 251 42.2
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 6.3e-37 158.7 81 91.4
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 7.0e-36 155.2 81 90.1
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.7e-34 150.6 76 92.1
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 8.8e-31 138.3 117 59.0
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.7e-29 132.9 69 87.0
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.3e-26 124.4 116 43.1
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 2.9e-26 123.2 178 40.4
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 2.5e-25 120.2 152 51.3
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.6e-24 116.3 58 91.4
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 1.2e-19 101.3 116 50.9
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 2.5e-17 93.6 111 55.0
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 4.7e-16 89.4 64 67.2
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 8.0e-16 88.6 45 86.7
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 1.8e-15 87.4 51 78.4
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 9.8e-14 81.6 44 81.8
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 1.9e-09 67.4 116 41.4


User provided reference genes

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