Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.3e-128 463.0 229 100.0
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 6.6e-120 434.1 229 93.4
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 3.3e-111 405.2 229 87.3
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.8e-109 399.4 229 84.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 7.1e-98 360.9 227 76.2
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.6e-97 359.8 226 77.0
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 3.5e-97 358.6 227 75.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 6.7e-96 354.4 227 75.8
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 8.7e-96 354.0 227 75.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 1.9e-95 352.8 227 73.1
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 4.3e-95 351.7 227 74.9
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 4.3e-95 351.7 227 72.7
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.7e-95 351.3 227 72.7
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 9.7e-95 350.5 228 73.2
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.6e-94 349.7 223 73.1
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 4.8e-94 348.2 227 73.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.1e-93 347.1 222 73.9
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-93 347.1 227 72.7
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.4e-93 346.7 222 73.4
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 3.1e-93 345.5 222 73.9
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 4.1e-93 345.1 223 74.9
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 4.1e-93 345.1 227 72.2
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.3e-93 344.7 227 71.8
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 9.0e-93 344.0 222 74.3
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 9.0e-93 344.0 222 73.0
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 1.2e-92 343.6 222 73.4
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 2.0e-92 342.8 222 73.0
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 2.6e-92 342.4 222 73.9
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.6e-92 342.4 222 73.0
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 4.5e-92 341.7 222 74.8
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 4.5e-92 341.7 222 73.9
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 5.9e-92 341.3 222 72.5
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 7.7e-92 340.9 222 72.5
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.0e-91 340.5 222 72.5
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.3e-91 340.1 222 71.6
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.3e-91 340.1 227 71.4
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.9e-91 339.0 225 73.8
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.9e-91 339.0 223 74.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 2.9e-91 339.0 227 70.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 3.8e-91 338.6 222 72.1
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 3.8e-91 338.6 227 69.2
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 5.0e-91 338.2 227 70.5
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 6.5e-91 337.8 228 68.9
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 8.5e-91 337.4 222 72.1
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.9e-90 336.3 222 73.0
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.9e-90 336.3 222 73.0
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 4.2e-90 335.1 227 70.0
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 5.5e-90 334.7 222 71.2
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 5.5e-90 334.7 222 73.0
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.6e-89 333.2 222 72.1
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 2.1e-89 332.8 222 70.3
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 7.9e-89 330.9 228 70.2
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.0e-88 330.5 227 67.8
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.0e-88 330.5 222 70.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.8e-88 329.7 222 69.4
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.3e-88 329.3 222 69.8
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 3.0e-88 328.9 228 69.3
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 5.1e-88 328.2 222 70.7
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 8.8e-88 327.4 222 71.2
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 1.1e-87 327.0 228 66.2
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.5e-87 326.6 222 69.8
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.5e-87 326.6 229 67.2
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.5e-87 326.6 222 71.2
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.5e-87 325.9 227 68.3
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 5.7e-87 324.7 222 70.3
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 9.7e-87 323.9 222 69.4
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 9.7e-87 323.9 222 69.8
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.3e-86 323.6 222 69.4
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 3.7e-86 322.0 209 75.6
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 4.8e-86 321.6 223 69.1
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 4.8e-86 321.6 223 69.1
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 4.8e-86 321.6 223 69.1
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 4.8e-86 321.6 223 69.1
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 6.3e-86 321.2 223 69.1
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 8.2e-86 320.9 222 68.9
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 8.2e-86 320.9 222 68.9
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 8.2e-86 320.9 223 69.1
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-85 320.1 215 72.6
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 2.6e-84 315.8 227 68.3
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 3.4e-84 315.5 223 66.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.3e-83 313.5 208 72.6
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.2e-83 312.8 223 68.6
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.8e-83 312.0 222 65.8
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 6.5e-83 311.2 264 62.9
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 8.5e-83 310.8 228 63.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 9.4e-82 307.4 223 67.7
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.8e-80 303.1 226 63.3
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 6.3e-78 294.7 222 62.2
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.3e-77 291.6 195 72.8
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.3e-75 287.0 222 61.3
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-74 283.9 209 67.5
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.9e-74 283.1 191 69.1
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 8.0e-73 277.7 197 66.5
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 5.2e-72 275.0 222 63.5
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 8.8e-64 247.7 222 53.2
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.2e-62 243.0 173 69.4
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 4.8e-62 241.9 168 72.0
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.1e-61 240.7 222 54.1
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 3.6e-57 225.7 151 70.2
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 6.8e-56 221.5 227 51.5
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 6.8e-56 221.5 226 52.7
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 6.3e-54 214.9 229 48.5
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 4.7e-49 198.7 139 69.8
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 4.4e-47 192.2 264 40.9
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 3.7e-46 189.1 155 56.8
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 9.2e-45 184.5 222 45.5
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 7.8e-44 181.4 128 69.5
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.1e-42 177.6 199 48.7
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 7.3e-42 174.9 222 45.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 5.2e-40 168.7 223 40.8
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.2e-38 163.3 196 49.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.6e-31 139.8 172 45.9
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 6.6e-27 125.2 110 60.0
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 6.6e-27 125.2 264 33.7
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 4.3e-26 122.5 79 72.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 3.0e-19 99.8 62 72.6
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.8e-16 90.5 51 80.4
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 2.0e-15 87.0 64 67.2
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 3.2e-13 79.7 46 80.4
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.3e-13 78.2 51 66.7
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 9.6e-10 68.2 50 66.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.8e-08 63.9 47 55.3
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 2.0e-07 60.5 39 66.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.4e-07 59.3 146 30.1


User provided reference genes

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