Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.5e-110 402.5 272 100.0
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.8e-92 343.2 268 92.2
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.8e-92 343.2 268 92.2
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.7e-74 283.5 219 91.3
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 3.6e-72 275.8 272 65.8
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.4e-63 247.3 264 54.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.0e-63 246.1 266 56.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 5.2e-63 245.4 266 63.2
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.0e-62 243.4 254 71.3
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 2.6e-62 243.0 253 54.5
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.3e-61 240.7 247 64.8
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.7e-61 240.4 257 51.8
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.7e-61 240.4 267 55.8
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.2e-61 240.0 262 52.7
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.2e-61 240.0 265 59.6
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.2e-61 240.0 264 55.3
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.9e-61 239.6 251 62.5
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.7e-61 239.2 261 68.6
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.7e-61 239.2 261 68.6
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 6.4e-61 238.4 262 52.3
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 1.4e-60 237.3 274 59.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.8e-60 236.9 254 53.9
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 4.1e-60 235.7 266 50.8
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 5.4e-60 235.3 271 52.0
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 9.2e-60 234.6 235 61.7
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.6e-59 233.8 279 49.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 3.5e-59 232.6 237 65.0
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 7.8e-59 231.5 237 57.8
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 7.8e-59 231.5 267 54.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.3e-58 229.9 214 60.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.9e-58 229.2 208 63.9
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 5.0e-58 228.8 271 49.4
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 8.6e-58 228.0 255 61.6
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 8.6e-58 228.0 240 51.7
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.1e-57 227.6 242 54.1
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 1.5e-57 227.3 210 74.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.5e-57 227.3 217 68.7
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.9e-57 226.9 253 55.7
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.9e-57 226.9 257 53.3
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 3.3e-57 226.1 253 64.0
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 3.3e-57 226.1 226 60.6
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 9.5e-57 224.6 235 62.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 3.6e-56 222.6 245 61.6
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 4.7e-56 222.2 266 47.0
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 6.2e-56 221.9 222 58.1
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.4e-55 220.7 207 54.6
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.3e-55 219.9 262 65.6
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.1e-55 219.5 256 49.2
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.1e-55 219.5 234 60.7
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 8.9e-55 218.0 293 50.2
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.2e-54 217.6 268 49.6
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 4.4e-54 215.7 213 61.0
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 5.8e-54 215.3 227 59.5
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 5.8e-54 215.3 211 74.9
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.7e-53 213.8 217 53.5
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.7e-53 212.6 231 53.2
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 4.9e-53 212.2 264 52.7
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.4e-52 209.9 225 64.9
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 3.2e-52 209.5 210 54.8
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 7.0e-52 208.4 207 59.4
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 9.2e-52 208.0 233 62.2
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 9.2e-52 208.0 201 55.2
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 9.2e-52 208.0 292 53.4
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 1.6e-51 207.2 219 53.9
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.6e-51 207.2 226 65.5
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.6e-51 207.2 226 65.5
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 2.7e-51 206.5 226 65.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.7e-51 206.5 222 64.0
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 2.7e-51 206.5 253 48.2
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.6e-51 205.7 209 58.9
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 4.6e-51 205.7 278 45.3
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 6.0e-51 205.3 208 51.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.3e-50 204.1 218 60.1
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.3e-50 204.1 258 46.9
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.3e-50 204.1 214 67.8
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.3e-50 204.1 214 67.8
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.3e-50 204.1 263 47.5
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.7e-50 203.8 211 49.8
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 2.3e-50 203.4 214 52.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 2.3e-50 203.4 211 56.4
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 3.0e-50 203.0 206 53.9
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 5.0e-50 202.2 214 55.6
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 6.6e-50 201.8 229 65.1
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.5e-49 200.7 226 64.2
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.5e-49 200.7 225 48.4
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.3e-49 199.5 218 58.3
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 4.3e-49 199.1 214 67.3
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.3e-49 199.1 214 67.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 7.3e-49 198.4 212 51.4
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 9.5e-49 198.0 226 64.6
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 9.5e-49 198.0 211 67.3
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.2e-48 197.6 233 57.9
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.6e-48 197.2 254 55.1
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.1e-48 196.8 198 64.1
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.1e-47 193.0 260 55.8
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.2e-46 191.0 219 66.7
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.5e-46 190.7 231 72.3
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-46 189.9 210 63.8
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.6e-46 189.9 210 63.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.6e-46 189.9 210 63.8
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 3.4e-46 189.5 216 47.2
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.4e-46 189.5 263 54.4
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.4e-46 189.1 210 63.8
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.8e-46 188.0 254 53.9
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.7e-45 187.2 221 49.3
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.2e-45 186.8 201 57.7
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.2e-45 186.8 151 80.1
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.7e-45 186.0 226 59.3
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.7e-45 186.0 259 53.7
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-44 184.1 202 67.3
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-44 184.1 202 67.3
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 2.4e-44 183.3 255 44.3
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.4e-44 183.3 246 56.1
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 2.4e-44 183.3 205 61.5
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 3.2e-44 183.0 207 47.8
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 5.4e-44 182.2 201 54.7
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.5e-43 179.5 204 45.1
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.0e-43 178.7 192 68.8
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.7e-42 177.2 210 61.0
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.7e-42 177.2 264 56.8
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 3.0e-42 176.4 256 42.2
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 8.6e-42 174.9 255 53.3
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 7.3e-41 171.8 249 42.2
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.1e-39 167.9 195 47.7
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 7.8e-35 151.8 219 49.3
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.9e-34 149.4 184 43.5
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 5.6e-33 145.6 186 43.5
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 7.3e-33 145.2 181 42.5
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 9.6e-33 144.8 200 42.0
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 9.6e-33 144.8 196 52.0
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.2e-32 144.4 189 53.4
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.2e-32 144.4 225 48.0
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.6e-32 144.1 209 40.2
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.6e-32 144.1 209 40.2
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 2.1e-32 143.7 191 40.8
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.4e-31 140.2 233 49.4
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 4.0e-31 139.4 209 50.2
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 3.4e-30 136.3 219 38.4
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.7e-29 134.0 202 47.5
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.4e-28 131.0 198 47.5
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.4e-28 131.0 198 47.5
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.4e-28 129.0 204 47.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.1e-27 127.1 219 44.7
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.5e-27 126.3 200 37.5
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 4.6e-27 125.9 189 47.6
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 6.0e-27 125.6 214 33.6
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 6.0e-27 125.6 198 47.0
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.7e-26 124.0 150 44.7
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.6e-24 117.5 250 34.8
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.4e-23 113.6 128 53.1
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 3.8e-21 106.3 227 31.3
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.9e-20 104.0 113 51.3
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.2e-19 101.3 227 32.6
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.7e-19 100.1 202 43.1
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.5e-17 94.4 257 25.7
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.3e-17 92.8 209 27.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 9.6e-17 91.7 156 34.6
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.6e-16 90.9 58 77.6
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 4.8e-16 89.4 105 49.5
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-14 84.7 163 42.3
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.8e-13 79.7 163 41.7
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-11 74.7 57 59.6
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-11 73.9 65 56.9
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 8.7e-10 68.6 55 56.4
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.8e-07 60.8 32 84.4


User provided reference genes

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