Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.9e-84 313.9 158 100.0
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.5e-82 307.4 158 97.5
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.5e-80 301.6 158 95.6
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.7e-64 248.8 141 90.1
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 2.2e-61 239.2 156 75.6
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 1.2e-56 223.4 156 70.5
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.6e-54 215.7 141 77.3
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 7.5e-54 214.2 157 66.9
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.3e-53 213.4 132 80.3
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.5e-51 205.3 141 72.3
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 6.8e-47 191.0 154 61.7
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 3.0e-39 165.6 146 52.7
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 1.3e-37 160.2 150 50.0
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 2.3e-34 149.4 139 51.1
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 4.3e-33 145.2 142 52.1
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 5.6e-33 144.8 154 50.0
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 7.3e-33 144.4 149 47.7
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.4e-31 140.2 146 48.6
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 3.0e-31 139.0 153 45.8
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 5.7e-30 134.8 156 41.7
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 2.9e-29 132.5 142 45.8
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.1e-28 130.6 97 66.0
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 2.4e-28 129.4 150 45.3
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 9.2e-28 127.5 158 43.7
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 9.2e-28 127.5 98 66.3
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 1.6e-27 126.7 150 44.0
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 4.6e-27 125.2 149 45.6
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 1.0e-26 124.0 149 45.0
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 2.3e-26 122.9 130 47.7
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 3.0e-26 122.5 154 43.5
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 4.3e-25 118.6 130 46.2
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 1.2e-24 117.1 140 40.7
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 1.6e-24 116.7 152 44.1
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 6.2e-24 114.8 152 42.1
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 2.3e-23 112.8 142 44.4
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 2.3e-23 112.8 146 39.0
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 6.8e-23 111.3 152 39.5
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 8.9e-23 110.9 156 35.9
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 8.9e-23 110.9 141 40.4
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 8.9e-23 110.9 141 40.4
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 8.9e-23 110.9 141 40.4
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.2e-22 110.5 141 40.4
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 5.8e-22 108.2 103 51.5
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 2.2e-21 106.3 140 36.4
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.2e-21 106.3 140 36.4
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 8.3e-21 104.4 154 36.4
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.1e-20 104.0 149 37.6
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 3.2e-20 102.4 154 36.4
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 2.5e-17 92.8 158 34.8
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 2.1e-16 89.7 150 37.3
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 1.8e-15 86.7 137 35.8
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.5e-14 83.6 143 37.8
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 8.3e-13 77.8 153 29.4
Sed0015156 Sechium edule HOM05D011459 ORTHO05D013640 4.6e-11 72.0 133 36.1
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 6.0e-11 71.6 149 29.5
Sed0004364 Sechium edule HOM05D011459 ORTHO05D013640 7.8e-11 71.2 154 30.5
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 1.0e-10 70.9 154 30.5
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.3e-10 70.5 154 28.6
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 1.3e-10 70.5 153 26.8
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 3.0e-10 69.3 153 29.4
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 8.6e-10 67.8 82 36.6
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 1.5e-09 67.0 147 32.0
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 1.5e-09 67.0 140 29.3
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 3.3e-09 65.9 144 26.4
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 9.5e-09 64.3 149 28.2
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.1e-08 63.2 141 27.0
Sp5g12740 Schrenkiella parvula HOM05D009945 ORTHO05D012028 2.8e-08 62.8 149 31.5
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 3.6e-08 62.4 150 27.3
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 4.0e-07 58.9 150 27.3
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 4.0e-07 58.9 69 40.6
Solyc04g015510.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 4.0e-07 58.9 143 22.4
AT3G49330 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 8.9e-07 57.8 152 28.9
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 8.9e-07 57.8 149 26.8
AL5G29080 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 1.2e-06 57.4 152 28.9
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 2.6e-06 56.2 149 24.8
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 9.9e-06 54.3 93 26.9
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 9.9e-06 54.3 93 26.9


User provided reference genes

Program Settings