Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.2e-85 317.0 158 100.0
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 3.5e-51 205.3 169 66.3
Sed0015156 Sechium edule HOM05D011459 ORTHO05D013640 1.5e-30 136.7 152 53.9
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 2.6e-22 109.4 150 41.3
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 1.2e-19 100.5 163 36.8
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 1.0e-18 97.4 163 35.6
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 1.3e-18 97.1 169 38.5
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 1.9e-17 93.2 178 38.2
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 5.6e-17 91.7 164 35.4
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 2.8e-16 89.4 165 35.8
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 6.2e-16 88.2 168 33.9
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.1e-15 87.4 148 37.8
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.8e-15 86.7 166 34.9
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 1.8e-15 86.7 157 38.2
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.0e-15 85.5 147 37.4
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 5.2e-15 85.1 172 34.9
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 8.9e-15 84.3 147 36.7
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 1.2e-14 84.0 161 35.4
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 2.0e-14 83.2 155 32.9
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.0e-14 83.2 143 37.8
Sed0004364 Sechium edule HOM05D011459 ORTHO05D013640 2.6e-14 82.8 148 39.2
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 3.4e-14 82.4 162 34.6
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.4e-14 82.0 147 37.4
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 5.8e-14 81.6 158 34.8
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 1.3e-13 80.5 147 36.1
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 1.3e-13 80.5 134 35.8
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 1.3e-13 80.5 128 40.6
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 4.9e-13 78.6 174 34.5
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 4.9e-13 78.6 174 34.5
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.9e-12 76.6 174 33.3
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 2.4e-12 76.3 158 34.8
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 9.2e-12 74.3 135 37.8
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.7e-11 72.8 135 37.0
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.5e-11 72.4 153 33.3
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 4.6e-11 72.0 176 31.8
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 7.8e-11 71.2 141 36.2
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 1.3e-10 70.5 175 32.6
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 1.7e-10 70.1 159 32.7
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 1.7e-10 70.1 162 33.3
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 3.9e-10 68.9 167 33.5
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 2.8e-08 62.8 126 33.3
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 3.6e-08 62.4 126 33.3
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 6.2e-08 61.6 160 28.8
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 6.8e-07 58.2 160 31.2
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 6.8e-07 58.2 166 27.7
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 8.9e-07 57.8 89 34.8
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 1.5e-06 57.0 146 31.5
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 2.0e-06 56.6 154 27.3
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 2.6e-06 56.2 102 36.3
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.6e-06 56.2 102 36.3
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 4.4e-06 55.5 167 26.9
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 5.8e-06 55.1 95 35.8
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 7.6e-06 54.7 162 25.9
Sabra11G0112900 Salix brachista HOM05D000311 ORTHO05D000183 9.9e-06 54.3 58 46.6


User provided reference genes

Program Settings