Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.2e-83 313.2 158 100.0
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.5e-82 307.4 158 98.1
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.4e-82 307.0 158 97.5
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.5e-65 251.1 141 91.5
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 3.0e-63 245.4 156 78.2
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 2.9e-58 228.8 156 72.4
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.0e-55 220.3 157 69.4
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.8e-55 219.5 132 83.3
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 5.2e-55 218.0 141 78.7
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.0e-51 206.1 141 73.0
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 1.6e-48 196.4 154 63.6
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 4.0e-39 165.2 146 52.1
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 1.3e-37 160.2 150 49.3
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 2.3e-34 149.4 154 51.9
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 3.8e-34 148.7 139 50.4
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 1.9e-33 146.4 146 50.7
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 1.9e-33 146.4 150 47.3
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 2.1e-32 142.9 153 47.1
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 3.6e-32 142.1 155 45.8
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 4.0e-31 138.7 156 42.9
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 1.2e-30 137.1 146 46.6
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 2.2e-29 132.9 151 47.0
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.9e-29 131.7 97 67.0
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 8.3e-29 131.0 150 45.3
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 1.1e-28 130.6 158 44.3
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.1e-28 128.6 98 67.3
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 7.0e-28 127.9 149 46.3
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 1.6e-27 126.7 154 44.8
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 1.6e-27 126.7 149 45.0
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 1.7e-26 123.2 130 48.5
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 1.1e-25 120.6 144 41.0
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 2.5e-25 119.4 152 44.7
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 3.3e-25 119.0 130 46.9
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 1.6e-24 116.7 152 42.8
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 2.8e-24 115.9 156 37.8
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 3.6e-24 115.5 150 39.3
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 6.2e-24 114.8 152 40.1
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 1.4e-23 113.6 145 40.7
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.4e-23 113.6 145 40.7
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.4e-23 113.6 145 40.7
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.8e-23 113.2 145 40.7
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 2.3e-23 112.8 142 44.4
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 5.8e-22 108.2 144 36.1
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 5.8e-22 108.2 144 36.1
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 7.5e-22 107.8 154 37.0
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 1.3e-21 107.1 103 50.5
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 2.9e-21 105.9 154 37.0
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 4.9e-21 105.1 150 37.3
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 3.3e-17 92.4 158 34.2
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 4.3e-17 92.0 151 38.4
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 2.3e-15 86.3 137 35.0
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.1e-15 85.9 147 37.4
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 1.3e-13 80.5 153 30.1
Sed0004364 Sechium edule HOM05D011459 ORTHO05D013640 5.4e-12 75.1 154 31.2
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 7.1e-12 74.7 150 30.0
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 1.2e-11 73.9 154 31.2
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.6e-11 73.6 154 29.9
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 2.1e-11 73.2 153 27.5
Sed0015156 Sechium edule HOM05D011459 ORTHO05D013640 2.7e-11 72.8 133 36.1
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 3.5e-11 72.4 153 30.1
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.7e-10 70.1 86 36.0
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 2.3e-10 69.7 148 32.4
TAR362G0352 Trochodendron aralioides HOM05D008191 ORTHO05D010044 3.9e-10 68.9 140 29.3
SalBow7G3223 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.9e-09 66.6 154 26.6
SalBow7G3334 Salvia bowleyana HOM05D000059 ORTHO05D012084 1.9e-09 66.6 154 26.6
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 3.3e-09 65.9 150 28.0
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 4.3e-09 65.5 150 28.0
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 4.3e-09 65.5 144 26.4
Sp5g12740 Schrenkiella parvula HOM05D009945 ORTHO05D012028 5.6e-09 65.1 149 32.2
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 9.5e-09 64.3 149 28.2
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 9.5e-09 64.3 141 27.7
Peaxi162Scf01623g00014 Petunia axillaris HOM05D009933 ORTHO05D012084 2.8e-08 62.8 152 21.7
BcaB01g00725 Brassica carinata HOM05D009945 ORTHO05D012028 4.7e-08 62.0 152 30.3
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 4.7e-08 62.0 145 26.9
BcaC07g39401 Brassica carinata HOM05D009945 ORTHO05D012028 6.2e-08 61.6 152 29.6
C08p24330 Brassica napus HOM05D009945 ORTHO05D012028 6.2e-08 61.6 152 29.6
BolC8t50051H Brassica oleracea HOM05D009945 ORTHO05D012028 6.2e-08 61.6 152 29.6
BcaC07g39575 Brassica carinata HOM05D009945 ORTHO05D012028 8.1e-08 61.2 152 29.6
C08p26270 Brassica napus HOM05D009945 ORTHO05D012028 8.1e-08 61.2 152 29.6
BolC8t50245H Brassica oleracea HOM05D009945 ORTHO05D012028 8.1e-08 61.2 152 29.6
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 8.1e-08 61.2 150 28.0
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 8.1e-08 61.2 73 39.7
Solyc04g015510.1 Solanum lycopersicum HOM05D009933 ORTHO05D012084 1.1e-07 60.8 143 23.1
A06p18400 Brassica napus HOM05D009945 ORTHO05D012028 1.4e-07 60.5 152 28.9
BraA06t24921Z Brassica rapa HOM05D009945 ORTHO05D012028 1.4e-07 60.5 152 28.9
AT3G49330 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 1.8e-07 60.1 152 29.6
AL5G29080 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 2.3e-07 59.7 152 29.6
CARHR158270 Cardamine hirsuta HOM05D009945 ORTHO05D012028 2.3e-07 59.7 152 30.3
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 6.8e-07 58.2 149 26.8
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 1.5e-06 57.0 149 25.5
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.4e-06 55.5 144 27.1
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 5.8e-06 55.1 93 26.9
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 5.8e-06 55.1 93 26.9
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 9.9e-06 54.3 129 27.9
unitig_60.g25616 Utricularia gibba HOM05D009933 ORTHO05D012084 9.9e-06 54.3 152 24.3


User provided reference genes

Program Settings