Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004120.2 Cucumis melo HOM05D006914 ORTHO05D008583 7.8e-52 206.8 104 100.0
ClCG02G014340 Citrullus lanatus HOM05D006914 ORTHO05D008583 1.4e-48 196.1 104 94.2
Sed0012601 Sechium edule HOM05D006914 ORTHO05D008583 8.4e-46 186.8 104 89.4
CsaV3_2G007660 Cucumis sativus L. HOM05D006914 ORTHO05D008583 3.2e-45 184.9 95 97.9
Sed0026010 Sechium edule HOM05D006914 ORTHO05D008583 6.0e-44 180.6 104 86.5
Gohir.D08G256600 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.7e-43 179.1 104 83.7
Gorai.004G273700 Gossypium raimondii HOM05D006914 ORTHO05D008583 1.7e-43 179.1 104 83.7
COL.COLO4_23940 Corchorus olitorius HOM05D006914 ORTHO05D008583 2.3e-43 178.7 102 87.3
Thecc.09G152600 Theobroma cacao HOM05D006914 ORTHO05D008583 2.3e-43 178.7 104 83.7
Ciclev10009995m.g Citrus clementina HOM05D006914 ORTHO05D008583 4.3e-42 174.5 104 80.8
Atru.chr7.325 Acer truncatum HOM05D006914 ORTHO05D008583 7.3e-42 173.7 104 82.7
CiPaw.15G165400 Carya illinoinensis HOM05D006914 ORTHO05D008583 9.6e-42 173.3 104 80.8
Duzib187G0910 Durio zibethinus HOM05D006914 ORTHO05D008583 2.1e-41 172.2 102 81.4
Prupe.7G265800 Prunus persica HOM05D006914 ORTHO05D008583 3.6e-41 171.4 104 80.8
PGR102G2895 Punica granatum HOM05D006914 ORTHO05D008583 6.2e-41 170.6 104 76.9
MD15G1149500 Malus domestica HOM05D006914 ORTHO05D008583 8.1e-41 170.2 104 79.8
Duzib150G1072 Durio zibethinus HOM05D006914 ORTHO05D008583 1.1e-40 169.9 102 81.4
FAN23G1758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 1.8e-40 169.1 104 77.9
Nn8g40004 Nelumbo nucifera HOM05D006914 ORTHO05D008583 2.4e-40 168.7 105 78.1
Potri.006G181400 Populus trichocarpa HOM05D006914 ORTHO05D008583 2.4e-40 168.7 104 79.8
RcHm_v2.0_Chr2g0085261 Rosa chinensis HOM05D006914 ORTHO05D008583 3.1e-40 168.3 104 78.8
FAN26G2758 Fragaria x ananassa HOM05D006914 ORTHO05D008583 9.0e-40 166.8 104 76.9
Dinv41349 Davidia involucrata HOM05D006914 ORTHO05D008583 1.5e-39 166.0 99 80.8
QL02p093962 Quercus lobata HOM05D006914 ORTHO05D008583 2.0e-39 165.6 102 78.4
Hund04582 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.0e-39 165.6 104 81.7
TWI63G1652 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 3.4e-39 164.9 104 79.8
Cpa.g.sc46.184 Carica papaya HOM05D006914 ORTHO05D008583 4.5e-39 164.5 104 79.8
MD02G1005200 Malus domestica HOM05D006914 ORTHO05D008583 4.5e-39 164.5 104 76.9
AUR62015440 Chenopodium quinoa HOM05D006914 ORTHO05D008583 5.8e-39 164.1 105 79.0
GSVIVG01008452001 Vitis vinifera HOM05D006914 ORTHO05D008583 9.9e-39 163.3 105 77.1
Cfa020795 Carpinus fangiana HOM05D006914 ORTHO05D008583 1.7e-38 162.5 103 74.8
FvH4_1g00640 Fragaria vesca HOM05D006914 ORTHO05D008583 2.2e-38 162.2 104 75.0
TPR.G25932 Trifolium pratense HOM05D006914 ORTHO05D008583 2.2e-38 162.2 104 76.0
Nitab4.5_0009003g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 4.9e-38 161.0 104 76.0
EL10Ac3g05865 Beta vulgaris HOM05D006914 ORTHO05D008583 6.4e-38 160.6 105 77.1
CSS0049762 Camellia sinensis var. sinensis HOM05D006914 ORTHO05D008583 6.4e-38 160.6 105 76.2
Hma1.2p1_2085F.1_g313670 Hydrangea macrophylla HOM05D006914 ORTHO05D008583 6.4e-38 160.6 103 76.7
TWI34G0278 Tripterygium wilfordii HOM05D006914 ORTHO05D008583 6.4e-38 160.6 104 76.9
Lsat_1_v5_gn_7_49520 Lactuca sativa HOM05D006914 ORTHO05D008583 8.4e-38 160.2 105 76.2
Nitab4.5_0001448g0020 Nicotiana tabacum HOM05D006914 ORTHO05D008583 1.1e-37 159.8 104 76.0
Glyma.06G225000 Glycine max HOM05D006914 ORTHO05D008583 1.4e-37 159.5 104 74.0
AUR62002229 Chenopodium quinoa HOM05D006914 ORTHO05D008583 2.4e-37 158.7 103 77.7
Glyma.04G155300 Glycine max HOM05D006914 ORTHO05D008583 2.4e-37 158.7 104 75.0
CANSAT56G0295 Cannabis sativa HOM05D006914 ORTHO05D008583 4.2e-37 157.9 102 75.5
HanXRQChr03g0066101 Helianthus annuus HOM05D006914 ORTHO05D008583 4.2e-37 157.9 105 75.2
ECA240G0809 Erigeron canadensis HOM05D006914 ORTHO05D008583 5.4e-37 157.5 103 75.7
Lalb_Chr11g0072501 Lupinus albus HOM05D006914 ORTHO05D008583 7.1e-37 157.1 104 74.0
Ah.13g066550 Amaranthus hybridus HOM05D006914 ORTHO05D008583 2.1e-36 155.6 104 73.1
Nitab4.5_0000233g0040 Nicotiana tabacum HOM05D006914 ORTHO05D008583 2.1e-36 155.6 100 76.0
Phvul.007G242700 Phaseolus vulgaris HOM05D006914 ORTHO05D008583 4.6e-36 154.5 104 72.1
VMungo0720G1978 Vigna mungo HOM05D006914 ORTHO05D008583 2.3e-35 152.1 102 72.5
Aqoxy5G02159 Aquilegia oxysepala HOM05D006914 ORTHO05D008583 5.1e-35 151.0 103 71.8
Manes.14G142700 Manihot esculenta HOM05D006914 ORTHO05D008583 5.1e-35 151.0 97 77.3
Peaxi162Scf00156g01316 Petunia axillaris HOM05D006914 ORTHO05D008583 6.7e-35 150.6 102 75.5
Ca_02367_v3 Cicer arietinum L. HOM05D006914 ORTHO05D008583 8.7e-35 150.2 99 74.7
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 8.7e-35 150.2 101 75.2
Actinidia23563 Actinidia chinensis HOM05D006914 ORTHO05D008583 1.1e-34 149.8 95 77.9
Medtr2g046160 Medicago truncatula HOM05D006914 ORTHO05D008583 2.5e-34 148.7 104 68.3
Actinidia28379 Actinidia chinensis HOM05D006914 ORTHO05D008583 3.3e-34 148.3 95 78.9
MSTRG.10711 Avicennia marina HOM05D006914 ORTHO05D008583 4.3e-34 147.9 103 72.8
Lj6g0027463 Lotus japonicus HOM05D006914 ORTHO05D008583 5.6e-34 147.5 104 67.3
Migut.K00305 Erythranthe guttata HOM05D006914 ORTHO05D008583 9.6e-34 146.7 99 71.7
TAR383G0505 Trochodendron aralioides HOM05D006914 ORTHO05D008583 1.6e-33 146.0 92 77.2
PSO111G0010 Papaver somniferum HOM05D006914 ORTHO05D008583 4.0e-32 141.4 99 69.7
Sopen05g034470 Solanum pennellii HOM05D006914 ORTHO05D008583 4.0e-32 141.4 89 76.4
Carub.0008s1839 Capsella rubella HOM05D006914 ORTHO05D008583 5.3e-32 141.0 92 73.9
Sp6g19550 Schrenkiella parvula HOM05D006914 ORTHO05D008583 9.0e-32 140.2 92 73.9
AT5G57860 Arabidopsis thaliana HOM05D006914 ORTHO05D008583 1.2e-31 139.8 92 73.9
Psat1g017920 Pisum sativum HOM05D006914 ORTHO05D008583 1.2e-31 139.8 104 67.3
CARHR271600 Cardamine hirsuta HOM05D006914 ORTHO05D008583 1.5e-31 139.4 92 75.0
AL8G33910 Arabidopsis lyrata HOM05D006914 ORTHO05D008583 2.0e-31 139.0 90 75.6
Cc06_g14590 Coffea canephora HOM05D006914 ORTHO05D008583 2.6e-31 138.7 103 69.9
Oeu055276.1 Olea europaea HOM05D006914 ORTHO05D008583 2.6e-31 138.7 103 69.9
Thhalv10015128m.g Eutrema salsugineum HOM05D006914 ORTHO05D008583 5.8e-31 137.5 92 72.8
Oeu021334.1 Olea europaea HOM05D006914 ORTHO05D008583 3.8e-30 134.8 102 67.6
A03p12500 Brassica napus HOM05D006914 ORTHO05D008583 4.9e-30 134.4 92 71.7
Os03g0364000 Oryza sativa ssp. japonica HOM05D006914 ORTHO05D008583 6.5e-30 134.0 94 73.4
HPP92_020604 Vanilla planifolia HOM05D006914 ORTHO05D008583 8.4e-30 133.7 91 70.3
BolC3t13912H Brassica oleracea HOM05D006914 ORTHO05D008583 1.1e-29 133.3 90 73.3
ATR0763G197 Amborella trichopoda HOM05D006914 ORTHO05D008583 3.2e-29 131.7 100 65.0
unitig_748.g7196 Utricularia gibba HOM05D006914 ORTHO05D008583 3.2e-29 131.7 89 73.0
BraA03t10565Z Brassica rapa HOM05D006914 ORTHO05D008583 5.5e-29 131.0 90 71.1
C02p13800 Brassica napus HOM05D006914 ORTHO05D008583 1.2e-28 129.8 90 70.0
C09p49750 Brassica napus HOM05D006914 ORTHO05D008583 1.2e-28 129.8 92 68.5
BolC2t07499H Brassica oleracea HOM05D006914 ORTHO05D008583 1.2e-28 129.8 90 70.0
CDE05G0490 Ceratophyllum demersum HOM05D006914 ORTHO05D008583 1.6e-28 129.4 105 62.9
Aa31LG3G13700 Aethionema arabicum HOM05D006914 ORTHO05D008583 2.1e-28 129.0 92 68.5
A02p08150 Brassica napus HOM05D006914 ORTHO05D008583 2.7e-28 128.6 92 67.4
Zm00001eb329210 Zea mays HOM05D006914 ORTHO05D008583 7.9e-28 127.1 93 66.7
Eucgr.C02509 Eucalyptus grandis HOM05D006914 ORTHO05D008583 6.7e-27 124.0 76 78.9
TAR626G0439 Trochodendron aralioides HOM05D006914 ORTHO05D008583 8.7e-27 123.6 76 81.6
Rhsim03G0258700 Rhododendron simsii HOM05D000079 ORTHO05D000211 9.6e-26 120.2 76 80.3
PGSC0003DMG400023462 Solanum tuberosum HOM05D006914 ORTHO05D008583 1.3e-25 119.8 76 77.6
CAN.G694.81 Capsicum annuum HOM05D006914 ORTHO05D008583 1.1e-24 116.7 75 78.7
Haze_19153 Corylus avellana HOM05D006914 ORTHO05D008583 1.8e-24 115.9 76 75.0
BcaB05g22379 Brassica carinata HOM05D006914 ORTHO05D008583 9.0e-24 113.6 90 65.6
vmacro06059 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 9.0e-24 113.6 75 73.3
BraA02t05889Z Brassica rapa HOM05D006914 ORTHO05D008583 2.6e-23 112.1 79 70.9
PSO782G4630 Papaver somniferum HOM05D006914 ORTHO05D008583 3.4e-23 111.7 99 56.6
Pp3c19_17380 Physcomitrium patens HOM05D006914 ORTHO05D008583 5.8e-23 110.9 100 61.0
SGA_v2.0_scaffold222G42803 Striga asiatica HOM05D006914 ORTHO05D008583 1.0e-22 110.2 75 74.7
arahy.Tifrunner.gnm1.ann1.6E7PQ4 Arachis hypogaea HOM05D006914 ORTHO05D008583 1.1e-21 106.7 74 71.6
Gohir.A08G236100 Gossypium hirsutum HOM05D006914 ORTHO05D008583 1.1e-21 106.7 64 81.2
arahy.Tifrunner.gnm1.ann1.S2MTQV Arachis hypogaea HOM05D006914 ORTHO05D008583 1.4e-21 106.3 74 71.6
Mapoly0004s0198 Marchantia polymorpha HOM05D006914 ORTHO05D008583 2.5e-21 105.5 78 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2477 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.2e-20 103.2 93 61.3
SMO304G0019 Selaginella moellendorffii HOM05D006914 ORTHO05D008583 3.9e-19 98.2 73 67.1
Sc13g0007320 Simmondsia chinensis HOM05D006914 ORTHO05D008583 6.7e-19 97.4 64 78.1
CBR_g51779 Chara braunii HOM05D006914 ORTHO05D008583 4.3e-18 94.7 96 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3148 Anthoceros agrestis HOM05D006914 ORTHO05D008583 1.5e-15 86.3 78 53.8
Cre12.g554750 Chlamydomonas reinhardtii HOM05D006914 ORTHO05D008583 4.5e-15 84.7 86 51.2
Pp3c17_5060 Physcomitrium patens HOM05D006914 ORTHO05D008583 1.0e-14 83.6 98 51.0
Aa31LG1G14450 Aethionema arabicum HOM05D006914 ORTHO05D008583 8.5e-14 80.5 75 56.0
Haze_19154 Corylus avellana HOM05D002983 ORTHO05D003451 3.2e-13 78.6 62 67.7
BcaC04g19922 Brassica carinata HOM05D006914 ORTHO05D008583 7.9e-12 73.9 52 67.3
PRCOL_00002080 Prasinoderma coloniale HOM05D006914 ORTHO05D008583 2.3e-11 72.4 86 48.8
SHI02838 Sapria himalayana HOM05D006914 ORTHO05D008583 3.9e-11 71.6 87 46.0
C08p16940 Brassica napus HOM05D006914 ORTHO05D008583 4.5e-07 58.2 37 70.3


User provided reference genes

Program Settings