Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 6.4e-115 417.5 227 100.0
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 7.9e-65 251.1 230 70.0
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 7.7e-44 181.4 228 50.0
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 5.7e-39 165.2 118 64.4
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 2.6e-31 139.8 122 48.4
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.4e-31 139.0 122 48.4
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 7.5e-31 138.3 122 50.0
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 2.2e-30 136.7 122 49.2
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 6.3e-30 135.2 123 50.4
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 8.3e-30 134.8 131 43.5
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-29 134.4 122 49.2
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 1.1e-29 134.4 129 45.0
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.4e-29 134.0 122 49.2
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.4e-29 134.0 122 50.0
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-29 134.0 122 50.0
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-29 134.0 122 49.2
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 1.4e-29 134.0 122 48.4
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.8e-29 133.7 122 49.2
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.1e-29 132.9 122 50.0
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 4.1e-29 132.5 129 45.7
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 4.1e-29 132.5 123 48.8
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 5.4e-29 132.1 126 46.0
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 9.1e-29 131.3 124 46.8
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.2e-28 131.0 123 48.8
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.6e-28 130.6 122 48.4
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 3.5e-28 129.4 125 46.4
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 7.7e-28 128.3 123 44.7
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-27 127.1 123 44.7
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 2.9e-27 126.3 122 45.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.9e-27 126.3 122 47.5
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.9e-27 126.3 121 51.2
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 5.0e-27 125.6 128 45.3
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.5e-27 125.2 119 47.9
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 8.5e-27 124.8 122 45.9
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.9e-26 123.6 122 45.1
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.2e-26 122.9 119 47.1
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 4.2e-26 122.5 122 47.5
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 7.2e-26 121.7 125 48.0
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 7.2e-26 121.7 125 48.0
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 6.1e-25 118.6 128 43.0
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.0e-25 118.2 119 46.2
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.8e-24 117.1 127 45.7
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.0e-24 116.3 122 43.4
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 4.0e-24 115.9 128 41.4
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 4.0e-24 115.9 137 44.5
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 6.8e-24 115.2 128 42.2
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 6.8e-24 115.2 125 47.2
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 6.8e-24 115.2 133 41.4
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 6.8e-24 115.2 133 41.4
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 8.8e-24 114.8 127 44.9
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.2e-23 114.4 127 45.7
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 1.2e-23 114.4 124 45.2
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.0e-23 113.6 128 39.8
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 2.0e-23 113.6 125 44.8
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.0e-23 113.6 133 40.6
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.6e-23 113.2 122 41.8
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 3.4e-23 112.8 129 45.7
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.4e-23 112.5 129 45.7
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 5.7e-23 112.1 117 45.3
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 9.8e-23 111.3 129 44.2
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 2.2e-22 110.2 127 44.1
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 2.2e-22 110.2 127 44.1
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.8e-22 109.8 121 45.5
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.9e-22 109.0 122 41.8
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 6.3e-22 108.6 116 44.8
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.1e-21 107.8 106 45.3
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 1.4e-21 107.5 131 46.6
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.8e-21 107.1 123 40.7
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 3.1e-21 106.3 128 39.1
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.2e-20 104.4 125 40.8
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 7.7e-20 101.7 130 43.1
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 7.7e-20 101.7 127 37.8
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 7.7e-20 101.7 123 37.4
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 1.3e-19 100.9 127 40.9
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.3e-19 100.1 116 39.7
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 3.8e-19 99.4 126 41.3
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 3.8e-19 99.4 119 40.3
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 3.8e-19 99.4 122 40.2
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 5.0e-19 99.0 112 42.9
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 6.6e-19 98.6 120 38.3
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 8.6e-19 98.2 119 40.3
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-18 97.4 124 38.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.9e-18 97.1 138 37.0
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.9e-18 97.1 128 39.1
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.5e-18 96.7 109 43.1
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 3.3e-18 96.3 118 37.3
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 4.3e-18 95.9 119 39.5
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 5.6e-18 95.5 119 39.5
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 5.6e-18 95.5 104 44.2
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 7.2e-18 95.1 126 38.9
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 7.2e-18 95.1 119 38.7
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 1.2e-17 94.4 115 38.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.2e-17 94.4 110 41.8
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 1.6e-17 94.0 119 41.2
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.1e-17 93.6 122 41.0
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.1e-17 93.6 111 40.5
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 2.1e-17 93.6 115 38.3
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 4.7e-17 92.4 109 41.3
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 4.7e-17 92.4 115 38.3
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 4.7e-17 92.4 115 38.3
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 4.7e-17 92.4 110 40.9
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 8.0e-17 91.7 130 35.4
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 8.0e-17 91.7 119 38.7
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 1.0e-16 91.3 111 40.5
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 1.0e-16 91.3 111 40.5
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.0e-16 91.3 119 35.3
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 1.4e-16 90.9 110 41.8
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.3e-16 90.1 94 46.8
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 3.0e-16 89.7 120 36.7
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.0e-16 89.7 128 37.5
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 5.2e-16 89.0 110 40.9
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 5.2e-16 89.0 130 40.8
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 5.2e-16 89.0 119 35.3
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 8.9e-16 88.2 124 39.5
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 8.9e-16 88.2 124 39.5
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-15 87.4 124 39.5
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.0e-15 87.0 120 35.8
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.0e-15 87.0 112 35.7
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 4.4e-15 85.9 116 38.8
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 4.4e-15 85.9 128 36.7
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 5.7e-15 85.5 102 46.1
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.3e-14 84.3 134 38.1
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.7e-14 84.0 114 39.5
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 2.2e-14 83.6 118 39.0
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-14 83.6 118 39.0
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 2.2e-14 83.6 118 39.0
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 2.2e-14 83.6 133 36.1
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.9e-14 82.4 128 35.9
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.9e-14 82.4 103 36.9
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 4.9e-14 82.4 99 46.5
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.9e-14 82.4 108 37.0
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.4e-14 82.0 104 38.5
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.4e-14 82.0 104 37.5
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 6.4e-14 82.0 118 38.1
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 6.4e-14 82.0 102 42.2
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-13 80.5 139 33.8
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 2.4e-13 80.1 120 33.3
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.2e-13 79.7 133 33.1
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 3.2e-13 79.7 122 36.1
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 7.0e-13 78.6 118 38.1
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.2e-13 78.2 111 35.1
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 9.2e-13 78.2 98 37.8
PSO782G1409 Papaver somniferum HOM05D002733 ORTHO05D003856 1.2e-12 77.8 106 39.6
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-12 77.4 133 33.1
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-12 77.0 129 32.6
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-12 77.0 69 50.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.9e-12 75.5 124 34.7
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-11 74.7 124 33.1
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 1.0e-11 74.7 123 32.5
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-11 74.3 127 31.5
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 1.3e-11 74.3 121 33.9
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 1.3e-11 74.3 121 33.9
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.0e-11 73.2 82 43.9
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 5.0e-11 72.4 118 37.3
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.6e-11 72.0 132 34.1
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 8.6e-11 71.6 109 34.9
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 8.6e-11 71.6 121 32.2
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 8.6e-11 71.6 121 32.2
ATR0594G191 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.1e-10 71.2 111 35.1
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 1.9e-10 70.5 121 31.4
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.5e-10 70.1 127 29.9
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 2.5e-10 70.1 149 33.6
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-10 69.7 93 35.5
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.3e-10 69.7 93 37.6
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 3.3e-10 69.7 89 44.9
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 5.6e-10 68.9 111 28.8
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 5.6e-10 68.9 106 34.9
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.5e-10 68.2 132 33.3
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 9.5e-10 68.2 117 30.8
ATR0730G071 Amborella trichopoda HOM05D020218 ORTHO05D017274 2.8e-09 66.6 110 34.5
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 8.0e-09 65.1 77 39.0
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-08 64.3 132 31.8
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.4e-08 64.3 82 37.8
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 2.3e-08 63.5 122 32.0
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 2.3e-08 63.5 122 32.0
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.0e-08 62.8 65 46.2
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.2e-08 62.4 123 34.1
MELO3C010987.2 Cucumis melo HOM05D000896 ORTHO05D000594 8.9e-08 61.6 128 28.1
Glyma.02G291400 Glycine max HOM05D000896 ORTHO05D000594 1.2e-07 61.2 133 34.6
Sc07g0010080 Simmondsia chinensis HOM05D020218 ORTHO05D017274 1.2e-07 61.2 121 28.9
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 3.4e-07 59.7 129 31.8
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 3.4e-07 59.7 124 28.2
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 4.4e-07 59.3 127 29.1
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 4.4e-07 59.3 133 30.8
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 4.4e-07 59.3 127 29.1
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 5.8e-07 58.9 131 31.3
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 5.8e-07 58.9 131 31.3
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 9.8e-07 58.2 127 28.3
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 1.3e-06 57.8 124 29.0
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 8.3e-06 55.1 113 31.0


User provided reference genes

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