Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 3.1e-66 255.0 128 100.0
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 2.2e-56 222.2 119 93.3
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 7.9e-46 187.2 127 80.3
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 7.4e-44 180.6 118 81.4
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 9.4e-31 137.1 97 67.0
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 4.7e-30 134.8 92 69.6
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 1.0e-29 133.7 83 73.5
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 1.0e-29 133.7 83 73.5
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 1.8e-29 132.9 83 73.5
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 2.3e-29 132.5 93 68.8
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 3.0e-29 132.1 91 70.3
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 3.0e-29 132.1 83 75.9
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 3.9e-29 131.7 91 70.3
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 3.9e-29 131.7 83 75.9
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 5.1e-29 131.3 83 75.9
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 5.1e-29 131.3 83 75.9
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 6.7e-29 131.0 86 73.3
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 6.7e-29 131.0 83 77.1
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 6.7e-29 131.0 83 72.3
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 8.8e-29 130.6 113 59.3
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 1.1e-28 130.2 83 72.3
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 1.5e-28 129.8 83 74.7
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 2.6e-28 129.0 87 72.4
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 3.3e-28 128.6 84 73.8
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 4.4e-28 128.3 100 66.0
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 4.4e-28 128.3 92 65.2
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 7.4e-28 127.5 83 71.1
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 7.4e-28 127.5 119 57.1
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 9.7e-28 127.1 83 73.5
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 9.7e-28 127.1 99 65.7
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 1.3e-27 126.7 88 71.6
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 1.3e-27 126.7 83 72.3
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 1.7e-27 126.3 94 66.0
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 2.2e-27 125.9 88 70.5
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 2.2e-27 125.9 94 67.0
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 2.2e-27 125.9 88 70.5
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 3.7e-27 125.2 99 64.6
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 3.7e-27 125.2 86 69.8
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 4.8e-27 124.8 83 69.9
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 4.8e-27 124.8 83 71.1
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 4.8e-27 124.8 101 62.4
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 6.3e-27 124.4 89 66.3
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 6.3e-27 124.4 83 71.1
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 8.2e-27 124.0 83 69.9
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 8.2e-27 124.0 97 64.9
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 8.2e-27 124.0 86 69.8
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 8.2e-27 124.0 86 69.8
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 1.1e-26 123.6 103 65.0
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.4e-26 123.2 94 64.9
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 1.4e-26 123.2 92 63.0
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 1.8e-26 122.9 88 68.2
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 1.8e-26 122.9 96 64.6
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 2.4e-26 122.5 88 67.0
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 2.4e-26 122.5 83 69.9
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 3.1e-26 122.1 88 68.2
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 3.1e-26 122.1 80 72.5
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 5.3e-26 121.3 103 60.2
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 7.0e-26 120.9 90 61.1
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 7.0e-26 120.9 83 69.9
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 7.0e-26 120.9 83 69.9
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 7.0e-26 120.9 100 64.0
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 9.1e-26 120.6 91 67.0
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 9.1e-26 120.6 86 67.4
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 9.1e-26 120.6 90 64.4
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 1.2e-25 120.2 87 67.8
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.5e-25 119.8 83 68.7
VMungo1215G0104 Vigna mungo HOM05D007223 ORTHO05D008932 2.0e-25 119.4 92 60.9
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 2.6e-25 119.0 83 69.9
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 2.6e-25 119.0 83 68.7
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 2.6e-25 119.0 87 66.7
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 2.6e-25 119.0 87 66.7
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 2.6e-25 119.0 102 59.8
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 3.5e-25 118.6 83 68.7
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 4.5e-25 118.2 83 68.7
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 4.5e-25 118.2 82 68.3
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 7.7e-25 117.5 85 65.9
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 7.7e-25 117.5 85 65.9
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 7.7e-25 117.5 85 65.9
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 7.7e-25 117.5 86 65.1
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 7.7e-25 117.5 89 66.3
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 7.7e-25 117.5 91 65.9
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 7.7e-25 117.5 86 65.1
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 1.0e-24 117.1 83 67.5
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 1.0e-24 117.1 83 67.5
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 1.0e-24 117.1 83 67.5
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 1.0e-24 117.1 85 68.2
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 1.0e-24 117.1 112 56.2
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 1.3e-24 116.7 105 56.2
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 1.3e-24 116.7 86 69.8
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 1.3e-24 116.7 86 69.8
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 2.9e-24 115.5 87 66.7
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 2.9e-24 115.5 83 65.1
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 2.9e-24 115.5 88 68.2
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 2.9e-24 115.5 96 56.2
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 6.5e-24 114.4 111 53.2
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 3.2e-23 112.1 81 65.4
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 5.5e-23 111.3 105 56.2
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 3.6e-22 108.6 83 61.4
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 6.1e-22 107.8 89 59.6
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 6.1e-22 107.8 86 64.0
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 2.3e-21 105.9 83 61.4
Zm00001eb432400 Zea mays HOM05D007223 ORTHO05D008932 1.1e-20 103.6 109 48.6
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 4.4e-20 101.7 79 60.8
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 8.2e-19 97.4 86 57.0
Nitab4.5_0001972g0010 Nicotiana tabacum HOM05D007223 ORTHO05D008932 6.8e-13 77.8 64 62.5
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 5.7e-12 74.7 80 46.2
SMO170G0055 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 6.3e-11 71.2 72 48.6
SMO141G0094 Selaginella moellendorffii HOM05D058183 ORTHO05D008932 8.3e-11 70.9 72 48.6
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 4.1e-10 68.6 96 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 1.0e-08 63.9 80 45.0
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 1.0e-08 63.9 87 39.1
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 1.3e-08 63.5 96 35.4
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 2.9e-08 62.4 47 57.4
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 2.9e-08 62.4 80 46.2
Aa31LG2G21740 Aethionema arabicum HOM05D000117 ORTHO05D000070 4.2e-07 58.5 78 35.9
ClCG07G001390 Citrullus lanatus HOM05D000117 ORTHO05D000070 5.5e-07 58.2 84 36.9
Nitab4.5_0006344g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 5.5e-07 58.2 79 36.7
THA.LOC104814530 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 5.5e-07 58.2 89 36.0
MELO3C012839.2 Cucumis melo HOM05D000117 ORTHO05D000070 3.6e-06 55.5 84 35.7
Sed0010170 Sechium edule HOM05D000117 ORTHO05D000070 4.7e-06 55.1 84 35.7
Gohir.D08G210100 Gossypium hirsutum HOM05D000117 ORTHO05D000070 8.0e-06 54.3 93 32.3
Os08g0109400 Oryza sativa ssp. japonica HOM05D000117 ORTHO05D000070 8.0e-06 54.3 91 36.3


User provided reference genes

Program Settings