Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 0.0e+00 1393.3 1087 100.0
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 0.0e+00 1296.6 1086 91.5
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 0.0e+00 1179.5 1078 88.1
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 3.1e-300 1035.4 1086 80.9
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 2.5e-185 653.7 1100 65.1
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 7.2e-172 609.0 1064 64.6
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 2.7e-171 607.1 1086 61.6
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.5e-171 606.7 1086 61.6
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 9.4e-164 582.0 1091 62.4
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 7.4e-161 572.4 1021 64.5
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 3.1e-159 567.0 1069 61.6
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 2.6e-158 563.9 1020 63.9
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.7e-157 561.2 1074 58.8
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.4e-156 558.1 723 59.6
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 8.8e-154 548.9 1091 58.1
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 9.7e-153 545.4 1038 62.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 1.3e-152 545.0 1095 61.3
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 6.3e-152 542.7 1075 61.8
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 1.7e-149 534.6 999 63.2
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.9e-149 533.9 1083 59.6
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 2.1e-147 527.7 1083 59.4
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 1.4e-146 525.0 980 61.8
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.8e-143 514.6 1089 60.1
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 4.2e-140 503.4 1078 58.5
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 1.8e-138 498.0 1064 57.7
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 2.3e-138 497.7 1054 57.7
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 4.5e-134 483.4 1065 60.9
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 2.2e-133 481.1 749 53.5
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 3.8e-133 480.3 1047 47.8
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.8e-130 471.5 1061 56.6
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 2.0e-129 468.0 991 63.0
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.7e-128 464.9 1060 55.1
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 2.8e-128 464.2 736 55.3
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 4.9e-128 463.4 1065 58.6
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.2e-126 458.8 1065 55.8
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.3e-125 455.3 1056 58.0
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.0e-122 445.7 1071 51.7
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 2.3e-122 444.5 1066 51.9
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.0e-118 431.4 1063 54.9
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 1.0e-117 429.1 1085 56.1
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 2.3e-117 427.9 747 52.5
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 6.6e-117 426.4 1052 57.1
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.8e-114 418.3 1063 48.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 7.0e-111 406.4 735 51.3
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 6.0e-110 403.3 917 61.5
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 3.9e-109 400.6 1074 56.9
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 4.7e-107 393.7 1075 54.1
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 4.9e-104 383.6 728 51.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 6.4e-104 383.3 728 50.7
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 8.6e-101 372.9 1059 53.8
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 1.9e-100 371.7 747 49.8
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 7.3e-100 369.8 733 50.6
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 9.5e-100 369.4 584 57.7
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.1e-99 368.2 1062 55.8
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 6.2e-99 366.7 645 54.9
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 6.2e-99 366.7 722 50.6
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 1.1e-98 365.9 728 50.7
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 1.4e-98 365.5 734 50.7
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 2.3e-98 364.8 734 50.8
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 5.4e-95 353.6 739 47.1
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.1e-91 341.7 1059 54.0
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 5.2e-90 337.0 734 46.9
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 2.0e-89 335.1 644 45.5
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 2.9e-88 331.3 723 48.5
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 5.4e-87 327.0 1103 54.0
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 5.1e-85 320.5 424 68.6
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 5.6e-84 317.0 1008 37.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 6.9e-82 310.1 751 48.2
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 2.6e-81 308.1 731 46.5
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 3.8e-80 304.3 738 46.2
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 3.8e-80 304.3 738 46.2
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 3.2e-79 301.2 932 58.5
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 6.0e-78 297.0 735 45.4
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.9e-76 292.0 744 44.6
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 9.9e-73 279.6 430 57.7
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 1.3e-72 279.3 678 56.6
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 3.2e-71 274.6 723 42.7
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 4.2e-71 274.2 733 48.0
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 7.1e-71 273.5 914 52.4
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 1.3e-69 269.2 728 47.7
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 2.1e-67 261.9 734 47.5
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 7.6e-65 253.4 678 51.6
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 1.9e-63 248.8 918 55.9
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 1.9e-52 212.2 734 27.0
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 5.7e-52 210.7 207 50.7
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 2.4e-50 205.3 262 45.0
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 1.2e-46 193.0 342 37.7
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 2.3e-37 162.2 368 62.0
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 7.4e-36 157.1 736 41.4
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 9.7e-36 156.8 345 30.7
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.8e-35 155.2 578 45.2
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 9.1e-26 123.6 241 33.2
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 1.0e-24 120.2 672 41.8
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.2e-22 113.2 247 29.1
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 6.1e-22 110.9 154 39.0
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 2.2e-19 102.4 150 36.7
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 3.7e-19 101.7 479 59.5
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 8.3e-19 100.5 156 37.2
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.2e-17 96.7 222 31.1
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 5.0e-16 91.3 152 37.5
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 8.6e-16 90.5 96 43.8
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 4.0e-13 81.6 160 32.5
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 3.4e-12 78.6 155 33.5
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 3.4e-12 78.6 148 34.5
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.7e-11 76.3 150 34.0
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 6.3e-11 74.3 153 32.7
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 2.9e-08 65.5 154 29.2
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 1.5e-07 63.2 183 25.1
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 1.5e-07 63.2 267 24.3
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 1.5e-07 63.2 146 30.1
arahy.Tifrunner.gnm1.ann1.44AK4G Arachis hypogaea HOM05D000424 ORTHO05D000355 5.6e-07 61.2 173 23.7
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.6e-06 59.7 134 26.9
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 2.1e-06 59.3 92 38.0
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 2.8e-06 58.9 134 26.9
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 2.8e-06 58.9 134 26.9
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.8e-06 58.9 115 31.3
Oeu031091.1 Olea europaea HOM05D000001 ORTHO05D009704 2.8e-06 58.9 180 29.4
Os10g0497366 Oryza sativa ssp. japonica HOM05D009701 ORTHO05D012112 2.8e-06 58.9 127 27.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 2.8e-06 58.9 168 26.8
SEGI_02727 Sequoiadendron giganteum HOM05D004783 ORTHO05D005581 2.8e-06 58.9 158 28.5
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 3.6e-06 58.5 143 29.4
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 3.6e-06 58.5 129 30.2
CsaV3_1G010760 Cucumis sativus L. HOM05D002890 ORTHO05D000003 3.6e-06 58.5 89 33.7
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 3.6e-06 58.5 94 39.4
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 4.7e-06 58.2 159 25.2
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 4.7e-06 58.2 214 25.7
HPP92_022359 Vanilla planifolia HOM05D001779 ORTHO05D001753 4.7e-06 58.2 133 27.1
arahy.Tifrunner.gnm1.ann1.5GFX18 Arachis hypogaea HOM05D000162 ORTHO05D000090 6.1e-06 57.8 113 32.7
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 6.1e-06 57.8 162 25.9
Aqoxy3G04285 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 8.0e-06 57.4 136 25.7
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 8.0e-06 57.4 110 29.1


User provided reference genes

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