Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.0e-122 442.6 372 100.0
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-115 420.6 372 90.9
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 5.2e-98 362.1 377 80.6
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 2.3e-77 293.5 318 83.3
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 6.2e-67 258.8 332 65.1
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.8e-66 257.3 332 69.6
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.8e-66 257.3 332 63.9
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.4e-66 256.9 332 69.6
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.1e-66 256.5 332 69.3
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 4.5e-65 252.7 334 72.8
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 2.2e-64 250.4 333 68.5
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 8.4e-64 248.4 337 69.4
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 2.4e-63 246.9 333 69.7
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 1.6e-62 244.2 324 71.3
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.8e-61 240.7 337 57.6
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 1.9e-60 237.3 334 65.0
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 3.3e-60 236.5 331 67.1
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.3e-60 236.1 324 67.6
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 5.6e-60 235.7 331 68.0
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.3e-59 234.6 334 74.0
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 2.8e-59 233.4 285 69.5
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.8e-59 232.6 331 71.6
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 6.2e-59 232.3 333 72.7
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 8.1e-59 231.9 329 67.8
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.4e-58 230.3 329 69.0
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.3e-58 229.2 326 69.0
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 5.3e-58 229.2 326 69.0
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.3e-58 229.2 331 72.2
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 2.6e-57 226.9 332 66.9
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 4.9e-56 222.6 326 71.5
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.1e-55 221.5 333 64.6
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.1e-55 221.5 329 65.7
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 1.4e-55 221.1 332 63.9
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 9.3e-55 218.4 333 64.0
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.2e-54 218.0 333 54.4
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 2.1e-54 217.2 326 67.8
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 3.5e-54 216.5 327 65.4
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 1.0e-53 214.9 329 70.2
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 2.3e-53 213.8 332 62.0
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.1e-52 211.5 324 65.7
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.5e-52 210.3 372 59.7
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 7.4e-52 208.8 331 68.9
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 7.4e-52 208.8 331 69.2
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.6e-51 207.6 325 69.8
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 2.1e-51 207.2 332 64.5
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.1e-51 207.2 328 66.5
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 2.8e-51 206.8 334 61.7
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.8e-51 206.1 332 64.5
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 4.8e-51 206.1 332 60.5
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.4e-50 204.5 328 65.9
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 2.4e-50 203.8 330 66.7
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.1e-50 203.4 328 65.2
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 3.1e-50 203.4 325 68.9
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 4.0e-50 203.0 330 62.4
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 2.0e-49 200.7 333 58.9
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 5.8e-49 199.1 328 64.9
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 7.6e-49 198.7 336 62.8
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.7e-48 197.6 333 66.4
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 2.2e-48 197.2 328 64.0
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 2.2e-48 197.2 328 64.0
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 2.2e-48 197.2 328 64.0
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 2.2e-48 197.2 328 64.0
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 2.2e-48 197.2 328 64.9
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 8.4e-48 195.3 328 64.0
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.9e-47 194.1 330 69.1
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.5e-47 193.7 328 63.7
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.1e-47 192.2 323 63.8
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.6e-46 189.5 319 67.4
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.0e-45 188.3 331 65.0
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.8e-45 187.6 333 63.4
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.8e-45 187.6 306 65.0
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.9e-45 186.4 324 63.6
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 3.9e-45 186.4 282 70.2
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 5.1e-45 186.0 327 64.5
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 1.5e-44 184.5 314 60.2
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.5e-44 184.5 325 69.5
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 2.5e-44 183.7 314 65.9
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 3.3e-44 183.3 338 65.1
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 7.4e-44 182.2 354 60.5
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 9.7e-44 181.8 336 58.6
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 4.8e-43 179.5 321 59.5
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.1e-42 178.3 336 50.6
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 5.3e-42 176.0 328 63.4
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.2e-41 174.9 328 65.5
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 1.5e-41 174.5 321 64.2
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.6e-41 173.7 351 59.8
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 2.6e-41 173.7 326 62.0
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 5.9e-41 172.6 372 61.0
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 7.6e-41 172.2 320 64.1
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 7.6e-41 172.2 329 62.0
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.3e-40 171.4 335 57.3
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.8e-40 169.9 328 65.2
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 3.8e-40 169.9 327 58.7
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 3.8e-40 169.9 327 48.0
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 6.5e-40 169.1 323 60.7
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 8.5e-40 168.7 333 64.3
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 1.4e-39 167.9 323 51.1
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.4e-39 167.9 328 64.9
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.5e-39 167.2 306 64.1
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.5e-39 167.2 336 62.2
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 4.2e-39 166.4 310 65.2
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.7e-38 163.7 331 59.2
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 3.6e-38 163.3 332 56.6
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-37 161.8 328 61.3
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 1.0e-37 161.8 328 61.3
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.3e-37 161.4 324 59.9
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.5e-36 157.9 325 56.0
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.5e-36 157.9 325 56.0
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 4.3e-36 156.4 322 59.6
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.2e-35 154.1 291 61.5
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.7e-35 153.3 288 62.5
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 3.1e-34 150.2 341 50.7
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 9.1e-34 148.7 308 60.7
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.4e-33 146.7 334 56.9
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 5.9e-33 146.0 350 56.0
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 7.7e-33 145.6 328 61.9
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.7e-32 144.4 257 56.8
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.7e-32 144.4 257 56.8
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 2.2e-32 144.1 257 56.8
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.2e-32 144.1 309 67.3
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 5.0e-32 142.9 331 59.2
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 6.5e-32 142.5 332 63.0
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 6.5e-32 142.5 369 39.0
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 1.1e-31 141.7 326 50.3
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.2e-31 140.2 268 71.3
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 5.5e-31 139.4 330 59.7
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 7.2e-31 139.0 297 60.9
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.2e-30 138.3 155 55.5
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.2e-30 138.3 337 59.6
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.7e-30 137.1 328 62.8
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 3.6e-30 136.7 297 60.3
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 6.1e-30 136.0 337 57.6
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 6.1e-30 136.0 328 62.5
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.9e-30 135.6 329 62.9
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 7.9e-30 135.6 329 63.2
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.0e-29 135.2 327 58.7
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.4e-29 134.8 337 57.9
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.8e-29 134.4 327 59.9
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 8.8e-29 132.1 321 59.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.0e-28 131.0 329 59.6
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 2.0e-28 131.0 337 56.1
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 2.0e-28 131.0 324 62.3
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 2.6e-28 130.6 326 59.5
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 4.4e-28 129.8 336 57.4
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 4.4e-28 129.8 323 62.8
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.3e-27 128.3 329 58.1
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 2.8e-27 127.1 319 58.3
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 6.3e-27 125.9 250 67.2
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 6.3e-27 125.9 328 57.9
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 8.2e-27 125.6 326 59.2
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.1e-26 123.6 329 57.1
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 4.1e-26 123.2 320 58.4
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.2e-25 121.7 326 45.4
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.2e-25 121.7 314 41.1
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 4.5e-25 119.8 313 36.7
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 4.5e-25 119.8 327 58.4
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 5.9e-25 119.4 321 58.3
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 7.7e-25 119.0 327 57.8
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-24 118.6 325 57.5
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 1.0e-24 118.6 325 57.5
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 3.8e-24 116.7 323 55.7
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.9e-23 114.4 325 57.2
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-23 114.0 300 59.7
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 7.2e-23 112.5 327 46.5
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 2.1e-22 110.9 242 69.8
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 6.1e-22 109.4 322 56.8
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 6.1e-22 109.4 322 56.8
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 6.1e-22 109.4 322 59.6
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.1e-20 105.1 325 57.8
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.5e-20 104.8 323 53.6
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 4.4e-20 103.2 208 52.9
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 9.7e-20 102.1 211 58.3
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 2.2e-19 100.9 216 46.8
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 4.8e-19 99.8 157 52.9
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 7.0e-18 95.9 201 52.7
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.8e-16 90.1 79 60.8
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 1.5e-15 88.2 333 52.0
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 1.5e-15 88.2 333 52.0
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 1.5e-15 88.2 333 52.0
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.2e-14 85.1 84 51.2
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 8.0e-14 82.4 106 44.3
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 2.2e-11 74.3 333 48.9
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 4.8e-11 73.2 233 64.4
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 3.1e-10 70.5 274 60.9
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 4.5e-09 66.6 112 41.1
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 1.9e-07 61.2 106 54.7


User provided reference genes

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