Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 3.5e-247 857.8 426 100.0
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 8.9e-219 763.5 424 89.6
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 2.4e-200 702.2 355 98.6
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 7.1e-176 620.9 355 86.2
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 2.2e-148 529.6 420 64.5
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 8.5e-145 517.7 364 69.8
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 9.4e-144 514.2 355 71.0
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.6e-143 513.5 404 64.9
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 3.6e-143 512.3 387 65.1
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.8e-142 510.0 364 68.4
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 2.0e-141 506.5 370 68.9
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 5.7e-141 505.0 399 63.4
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 2.8e-140 502.7 370 68.1
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 8.2e-140 501.1 379 63.6
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.1e-139 499.2 383 62.7
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 5.3e-139 498.4 404 62.4
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 7.0e-139 498.0 386 63.0
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 4.5e-138 495.4 386 62.7
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 4.5e-138 495.4 386 62.7
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 2.9e-137 492.7 396 60.9
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.3e-133 479.2 328 71.3
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 2.2e-132 476.5 426 59.4
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 2.2e-132 476.5 371 64.4
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.4e-131 473.8 428 57.5
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 4.1e-131 472.2 370 62.4
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 3.5e-130 469.2 408 57.6
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 6.5e-129 464.9 370 61.1
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 6.5e-129 464.9 385 59.2
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.9e-128 463.4 369 61.2
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 3.2e-128 462.6 366 63.1
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.8e-126 456.8 403 57.8
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 2.3e-126 456.4 348 64.4
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 9.8e-125 451.1 333 66.1
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.3e-124 450.7 356 61.5
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 1.7e-124 450.3 363 60.1
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 6.3e-124 448.4 299 72.9
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.3e-124 448.4 386 61.7
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.1e-123 447.6 368 58.4
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 4.1e-123 445.7 402 56.0
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 5.0e-121 438.7 333 64.0
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 5.0e-121 438.7 369 56.6
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 1.1e-120 437.6 369 57.5
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 1.5e-120 437.2 369 57.5
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.5e-120 436.4 334 63.5
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 3.3e-120 436.0 314 65.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 5.5e-120 435.3 366 59.3
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 9.5e-120 434.5 334 62.9
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 2.1e-119 433.3 340 63.5
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 8.0e-119 431.4 318 65.4
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.0e-118 431.0 369 56.4
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.0e-118 431.0 287 73.5
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.8e-118 430.3 369 55.8
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.3e-118 429.9 344 61.9
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 4.0e-118 429.1 377 57.0
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 2.0e-117 426.8 369 56.6
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 5.7e-117 425.2 316 64.6
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 1.7e-116 423.7 369 55.8
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 2.8e-116 422.9 336 61.6
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 8.3e-116 421.4 369 56.4
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.1e-115 421.0 369 56.4
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.1e-115 421.0 346 58.1
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.8e-115 420.2 386 54.9
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 5.4e-115 418.7 318 64.8
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 5.4e-115 418.7 369 56.1
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.2e-114 417.5 369 55.6
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 3.5e-114 416.0 313 64.2
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 3.5e-114 416.0 369 55.0
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 1.3e-113 414.1 454 50.9
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 2.3e-113 413.3 421 52.7
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 3.8e-113 412.5 335 60.0
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 5.0e-113 412.1 415 53.3
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 1.1e-112 411.0 369 54.2
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.5e-112 409.8 328 64.0
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 5.6e-112 408.7 367 55.3
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.0e-110 404.4 385 54.8
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 2.3e-110 403.3 352 56.5
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 4.0e-110 402.5 416 52.4
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.3e-108 397.5 361 57.3
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 7.0e-107 391.7 333 57.1
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.0e-105 387.9 428 48.1
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.0e-105 387.9 327 59.9
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 5.6e-104 382.1 347 55.0
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 2.8e-103 379.8 246 73.2
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 6.2e-103 378.6 366 52.5
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 9.8e-101 371.3 355 54.6
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 2.2e-100 370.2 364 52.2
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 2.2e-100 370.2 357 51.8
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 2.1e-98 363.6 246 71.1
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 1.4e-94 350.9 352 51.7
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 8.9e-94 348.2 412 48.5
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 1.9e-91 340.5 232 70.7
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.9e-91 340.5 348 53.4
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.3e-89 334.3 340 49.4
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 7.3e-88 328.6 426 43.0
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 4.4e-85 319.3 333 48.9
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 7.6e-85 318.5 225 68.4
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 3.0e-81 306.6 300 52.7
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 5.6e-80 302.4 303 52.1
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 7.3e-80 302.0 291 53.3
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 2.8e-79 300.1 248 61.3
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 3.1e-78 296.6 344 49.1
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 9.6e-72 275.0 205 66.3
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 4.6e-58 229.6 182 61.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 9.7e-48 195.3 175 57.7
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 9.4e-43 178.7 235 41.3
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.4e-41 174.9 344 31.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.5e-40 170.6 232 42.2
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 7.2e-35 152.5 368 29.1
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 3.9e-33 146.7 167 47.3
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 5.3e-22 109.8 258 31.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 7.5e-16 89.4 247 30.8
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.2e-15 87.8 367 21.8
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 6.3e-15 86.3 192 33.3
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 3.1e-14 84.0 158 36.1
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 5.9e-13 79.7 192 32.8
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 2.9e-12 77.4 219 30.1
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.9e-12 77.4 187 32.6
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 8.5e-12 75.9 195 30.3
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.1e-11 75.5 195 30.3
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.1e-11 75.5 182 33.5
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.5e-11 75.1 185 31.9
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.5e-11 75.1 201 29.4
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 2.5e-11 74.3 193 31.6
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 2.5e-11 74.3 185 31.9
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 3.2e-11 73.9 193 31.6
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.6e-10 71.6 179 30.7
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.7e-10 70.9 185 31.9
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 6.1e-10 69.7 185 31.4
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 8.0e-10 69.3 196 29.6
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 8.0e-10 69.3 196 29.6
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 8.0e-10 69.3 156 34.0
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 8.0e-10 69.3 180 31.7
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.4e-09 68.6 156 32.7
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 1.4e-09 68.6 194 29.9
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.4e-09 68.6 193 28.5
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 6.8e-09 66.2 197 27.9
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 8.8e-09 65.9 191 31.4
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 8.8e-09 65.9 195 27.2
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 4.4e-08 63.5 164 31.7
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 7.5e-08 62.8 153 31.4
Medtr3g033040 Medicago truncatula HOM05D001779 ORTHO05D001753 9.8e-08 62.4 114 33.3
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.1e-06 58.9 100 37.0
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.1e-06 58.9 100 37.0
Ciclev10033964m.g Citrus clementina HOM05D005622 ORTHO05D002854 1.1e-06 58.9 145 26.9
Psat5g209840 Pisum sativum HOM05D001779 ORTHO05D001753 1.1e-06 58.9 114 31.6
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.4e-06 57.8 360 20.8
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 2.4e-06 57.8 112 33.9
Haze_03158 Corylus avellana HOM05D001779 ORTHO05D001753 4.1e-06 57.0 166 26.5
COL.COLO4_04875 Corchorus olitorius HOM05D001779 ORTHO05D001753 5.4e-06 56.6 169 27.8
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 5.4e-06 56.6 42 54.8
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 5.4e-06 56.6 114 32.5
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 7.0e-06 56.2 112 31.2
CiPaw.02G070600 Carya illinoinensis HOM05D001779 ORTHO05D001753 7.0e-06 56.2 170 24.7
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 7.0e-06 56.2 116 26.7
vmacro00256 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 7.0e-06 56.2 120 34.2
Gohir.D10G255600 Gossypium hirsutum HOM05D005622 ORTHO05D002854 9.1e-06 55.8 193 25.4
PGR102G3313 Punica granatum HOM05D000001 ORTHO05D000003 9.1e-06 55.8 340 22.6
QL06p014037 Quercus lobata HOM05D001779 ORTHO05D001753 9.1e-06 55.8 170 25.9
Sopen08g013850 Solanum pennellii HOM05D001779 ORTHO05D001753 9.1e-06 55.8 97 35.1
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 9.1e-06 55.8 162 27.8


User provided reference genes

Program Settings