Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 4.7e-219 764.2 387 100.0
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.0e-56 224.9 156 76.9
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 5.7e-55 219.2 156 75.6
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 2.2e-51 207.2 156 71.8
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 2.8e-46 190.3 156 66.0
MELO3C030913.2 Cucumis melo HOM05D001080 ORTHO05D044896 1.9e-34 151.0 79 98.7
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 2.8e-30 137.1 156 48.7
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 3.1e-29 133.7 156 48.7
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 2.9e-27 127.1 156 45.5
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.8e-27 126.7 155 46.5
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 9.4e-26 122.1 156 47.4
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 4.0e-24 116.7 156 44.2
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 3.4e-23 113.6 155 45.8
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.2e-22 110.9 158 43.0
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.8e-22 110.5 151 43.0
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 3.7e-22 110.2 152 44.1
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.1e-21 108.6 152 43.4
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.4e-21 108.2 161 41.6
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 9.1e-21 105.5 156 42.3
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 9.1e-21 105.5 160 42.5
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.5e-20 103.2 155 40.0
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 7.7e-20 102.4 156 40.4
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.0e-19 102.1 155 38.7
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.3e-19 101.7 156 40.4
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 2.3e-19 100.9 174 39.1
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.8e-19 100.1 155 38.7
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 5.0e-19 99.8 155 41.3
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 5.0e-19 99.8 156 39.1
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 8.6e-19 99.0 155 38.7
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.1e-18 98.6 156 41.7
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.5e-18 97.4 155 38.7
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 3.3e-18 97.1 154 37.0
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 1.2e-17 95.1 51 90.2
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 2.1e-17 94.4 153 37.3
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.1e-17 94.4 156 38.5
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 2.8e-17 94.0 158 38.0
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 3.6e-17 93.6 158 36.7
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 8.9e-16 89.0 51 88.2
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 8.9e-16 89.0 51 88.2
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 8.9e-16 89.0 51 88.2
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 8.9e-16 89.0 51 88.2
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.5e-15 88.2 156 34.6
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 2.6e-15 87.4 51 86.3
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 4.4e-15 86.7 155 38.7
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 1.3e-14 85.1 51 84.3
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.3e-14 85.1 156 35.3
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 1.7e-14 84.7 51 84.3
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 2.2e-14 84.3 51 84.3
Cpa.g.sc1440.1 Carica papaya HOM05D001098 ORTHO05D002527 2.8e-14 84.0 51 82.4
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 3.7e-14 83.6 51 82.4
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 3.7e-14 83.6 51 84.3
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 3.7e-14 83.6 51 82.4
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 84.3
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 4.9e-14 83.2 59 74.6
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 4.9e-14 83.2 51 82.4
DCAR_006385 Daucus carota HOM05D001098 ORTHO05D002527 8.3e-14 82.4 51 82.4
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 8.3e-14 82.4 64 73.4
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 8.3e-14 82.4 51 82.4
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 8.3e-14 82.4 51 82.4
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 1.1e-13 82.0 51 82.4
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 1.1e-13 82.0 51 82.4
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 1.1e-13 82.0 51 82.4
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 1.1e-13 82.0 51 82.4
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 1.4e-13 81.6 51 82.4
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 1.4e-13 81.6 51 82.4
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 1.4e-13 81.6 51 82.4
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 1.4e-13 81.6 51 82.4
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 1.4e-13 81.6 51 82.4
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 1.4e-13 81.6 54 79.6
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 1.8e-13 81.3 51 82.4
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 1.8e-13 81.3 51 82.4
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.8e-13 81.3 51 82.4
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 1.8e-13 81.3 51 82.4
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 1.8e-13 81.3 51 80.4
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 1.8e-13 81.3 170 31.8
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
EL10Ac9g21546 Beta vulgaris HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 80.4
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 2.4e-13 80.9 51 82.4
Haze_01974 Corylus avellana HOM05D001098 ORTHO05D002527 3.2e-13 80.5 51 80.4
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 3.2e-13 80.5 51 80.4
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 3.2e-13 80.5 51 78.4
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 3.2e-13 80.5 51 80.4
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 78.4
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BolC1t00347H Brassica oleracea HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 78.4
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 4.1e-13 80.1 51 80.4
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 4.1e-13 80.1 51 80.4
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 5.4e-13 79.7 51 80.4
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 5.4e-13 79.7 51 80.4
Hund06357 Selenicereus undatus HOM05D001098 ORTHO05D002527 5.4e-13 79.7 51 78.4
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 5.4e-13 79.7 51 80.4
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 7.0e-13 79.3 51 80.4
CDE10G0149 Ceratophyllum demersum HOM05D001098 ORTHO05D002527 7.0e-13 79.3 51 80.4
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 7.0e-13 79.3 51 80.4
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 7.0e-13 79.3 156 36.5
MBI04_g31202_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 7.0e-13 79.3 51 80.4
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 7.0e-13 79.3 51 80.4
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 7.0e-13 79.3 51 78.4
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 7.0e-13 79.3 51 76.5
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 9.2e-13 79.0 51 78.4
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 9.2e-13 79.0 51 78.4
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 9.2e-13 79.0 51 80.4
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.2e-12 78.6 51 78.4
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 1.2e-12 78.6 61 67.2
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 1.2e-12 78.6 51 78.4
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 1.6e-12 78.2 51 80.4
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 1.6e-12 78.2 51 78.4
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 2.0e-12 77.8 153 35.3
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 2.0e-12 77.8 156 35.3
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 3.5e-12 77.0 50 80.0
MD05G1140500 Malus domestica HOM05D001098 ORTHO05D002527 3.5e-12 77.0 51 78.4
vmacro02343 Vaccinium macrocarpon HOM05D001098 ORTHO05D002527 3.5e-12 77.0 51 78.4
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 4.5e-12 76.6 51 76.5
ATR0057G016 Amborella trichopoda HOM05D001098 ORTHO05D002527 5.9e-12 76.3 51 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1241 Anthoceros agrestis HOM05D001098 ORTHO05D002527 5.9e-12 76.3 54 72.2
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 7.8e-12 75.9 156 31.4
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 7.8e-12 75.9 51 74.5
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 7.8e-12 75.9 152 34.9
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 1.3e-11 75.1 51 76.5
SEGI_11233 Sequoiadendron giganteum HOM05D001098 ORTHO05D002527 1.3e-11 75.1 51 72.5
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 1.7e-11 74.7 58 72.4
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 1.7e-11 74.7 58 72.4
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 2.3e-11 74.3 51 74.5
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 2.3e-11 74.3 51 74.5
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 2.3e-11 74.3 59 71.2
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 2.3e-11 74.3 51 72.5
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 3.9e-11 73.6 51 72.5
CBR_g38158 Chara braunii HOM05D001098 ORTHO05D000301 3.9e-11 73.6 76 51.3
Hma1.2p1_0271F.1_g108730 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 3.9e-11 73.6 45 84.4
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 3.9e-11 73.6 51 74.5
RcHm_v2.0_Chr6g0281091 Rosa chinensis HOM05D001098 ORTHO05D044896 3.9e-11 73.6 47 83.0
QL05p062370 Quercus lobata HOM05D001098 ORTHO05D002527 6.6e-11 72.8 51 70.6
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 6.6e-11 72.8 51 70.6
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 1.1e-10 72.0 51 72.5
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 3.3e-10 70.5 157 33.1
Zm00001eb137090 Zea mays HOM05D001098 ORTHO05D002648 3.3e-10 70.5 51 70.6
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 5.6e-10 69.7 51 68.6
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 4.7e-09 66.6 51 72.5
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 1.4e-08 65.1 158 28.5
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.8e-08 64.7 157 29.3
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.3e-08 64.3 158 32.3
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 8.9e-08 62.4 158 33.5
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.7e-06 58.2 189 28.6
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 6.4e-06 56.2 151 29.1
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 6.4e-06 56.2 145 28.3


User provided reference genes

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