Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1354.7 650 100.0
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1338.9 650 98.5
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1303.1 643 96.7
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1281.9 650 92.9
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1137.9 652 80.8
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1135.9 691 78.6
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1133.2 651 80.0
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1129.8 651 79.7
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1129.0 651 79.4
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1127.5 651 80.5
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1127.5 651 80.3
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1125.5 651 79.6
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1124.8 642 81.2
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1121.7 646 81.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1121.7 648 79.5
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1121.3 650 79.8
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1120.9 652 80.5
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1119.0 640 80.9
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1118.2 651 80.5
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1115.9 651 79.4
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 650 79.2
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1114.4 651 78.5
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1114.0 650 79.4
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1112.8 649 79.5
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1111.7 652 78.8
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1108.2 639 80.0
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 651 78.8
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1102.8 651 78.5
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1100.9 651 78.3
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1098.6 654 78.4
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 652 78.8
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1096.3 646 78.2
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1095.5 641 79.3
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1090.1 637 79.4
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 0.0e+00 1089.7 669 75.8
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 0.0e+00 1089.7 641 77.1
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1087.8 641 78.8
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1086.2 651 76.8
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 655 77.6
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1084.7 649 76.6
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1083.6 650 75.5
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1080.5 651 75.0
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1078.9 650 74.5
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1078.9 650 76.6
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1078.2 634 80.9
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 805 66.7
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1076.2 682 73.8
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 4.4e-312 1074.3 644 78.6
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 1.8e-311 1072.0 651 75.3
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 8.9e-311 1069.7 662 75.2
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.5e-310 1068.9 651 76.3
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 3.4e-310 1067.8 653 75.5
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 7.5e-310 1066.6 725 70.1
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 2.2e-309 1065.1 647 76.2
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 2.8e-309 1064.7 650 76.3
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 6.3e-309 1063.5 642 75.7
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 2.4e-308 1061.6 646 74.6
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 9.2e-308 1059.7 650 75.7
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 3.5e-307 1057.7 656 75.9
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 4.5e-307 1057.4 650 74.0
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 5.9e-307 1057.0 652 75.3
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 1.7e-306 1055.4 638 75.7
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.1e-305 1052.7 649 75.8
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 649 75.7
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 2.1e-304 1048.5 668 72.2
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 2.8e-304 1048.1 643 74.8
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.0e-303 1046.2 650 73.5
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 4.0e-303 1044.3 636 75.9
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 5.2e-303 1043.9 649 75.2
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 6.8e-303 1043.5 636 76.3
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 3.4e-302 1041.2 649 74.9
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 3.7e-301 1037.7 652 74.1
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 1.1e-300 1036.2 594 79.5
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 1.8e-300 1035.4 613 77.5
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 649 74.7
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 649 74.7
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 649 74.7
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.7e-299 1031.6 649 74.4
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 4.6e-299 1030.8 614 76.9
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 6.6e-298 1026.9 646 73.5
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 6.6e-298 1026.9 647 73.3
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 2.5e-297 1025.0 597 79.4
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 1.6e-296 1022.3 793 62.9
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 8.9e-295 1016.5 646 72.0
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 8.1e-288 993.4 646 72.0
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.4e-287 992.6 598 77.8
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 1.1e-284 983.0 644 70.2
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 6.4e-277 957.2 652 70.7
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 9.0e-271 936.8 558 76.9
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 4.4e-270 934.5 643 71.5
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.0e-266 921.8 594 71.2
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 6.9e-255 884.0 556 73.4
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 9.3e-252 873.6 575 69.7
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 1.3e-248 863.2 641 63.2
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 2.3e-242 842.4 638 61.9
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 2.6e-238 828.9 640 61.1
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 6.8e-202 708.0 514 66.9
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 3.0e-194 682.6 363 83.2
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 1.8e-170 603.6 371 76.8
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 9.9e-161 571.2 376 70.5
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 7.1e-159 565.1 387 67.7
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 2.1e-155 553.5 557 51.2
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 4.3e-148 529.3 532 50.9
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.5e-124 451.1 241 82.2
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 8.3e-83 312.4 740 31.2
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 1.6e-78 298.1 152 84.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 5.4e-66 256.5 244 55.7
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.1e-54 218.0 194 53.6
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 6.9e-29 133.3 72 86.1
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.2e-28 132.5 73 83.6
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 4.3e-23 114.0 65 76.9
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.6e-23 113.6 71 67.6
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 7.4e-23 113.2 70 70.0
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 4.0e-21 107.5 101 56.4
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.5e-20 105.5 70 65.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 8.4e-19 99.8 64 68.8
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 5.5e-18 97.1 95 54.7
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 6.7e-16 90.1 66 66.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 6.7e-16 90.1 66 66.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 6.7e-16 90.1 66 66.7
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 3.1e-13 81.3 102 44.1
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.2e-12 79.3 98 49.0
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.1e-10 72.8 52 59.6
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 2.2e-06 58.5 69 42.0
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 8.2e-06 56.6 76 43.4


User provided reference genes

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