Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.0e-228 795.4 405 100.0
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 8.2e-206 720.3 372 97.8
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.0e-196 689.1 400 88.8
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 3.5e-156 555.4 413 72.2
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 3.1e-80 303.1 435 45.7
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 3.5e-79 299.7 445 47.0
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.2e-78 297.0 417 46.8
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 2.2e-78 297.0 414 48.3
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 9.4e-77 291.6 428 46.0
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 3.0e-75 286.6 331 53.2
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.0e-75 286.2 428 44.9
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 8.8e-75 285.0 402 47.3
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 8.8e-75 285.0 398 48.2
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.5e-74 284.3 419 45.3
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.6e-74 283.5 405 48.4
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.3e-73 278.9 419 43.7
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.4e-72 277.7 419 45.3
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.8e-72 277.3 402 47.5
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.4e-72 276.9 403 48.4
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 7.0e-72 275.4 407 46.7
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.2e-71 274.6 419 43.4
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 2.0e-71 273.9 409 45.2
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.5e-71 272.7 407 44.2
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.7e-70 270.8 407 44.2
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.8e-70 269.6 406 44.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 8.5e-70 268.5 417 44.4
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.5e-69 267.7 403 44.4
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 5.5e-69 265.8 397 44.6
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 9.4e-69 265.0 399 44.6
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.2e-68 264.6 339 49.0
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 2.1e-68 263.8 419 43.9
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 4.7e-68 262.7 400 44.5
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 6.1e-68 262.3 402 44.0
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 8.0e-68 261.9 428 44.4
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 2.3e-67 260.4 317 51.1
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 3.0e-67 260.0 419 43.9
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 4.0e-67 259.6 452 43.4
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 1.5e-66 257.7 404 44.8
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 2.0e-66 257.3 437 41.9
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 2.6e-66 256.9 425 44.0
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 5.7e-66 255.8 407 44.2
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 5.7e-66 255.8 400 44.0
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 9.8e-66 255.0 448 41.7
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.3e-65 254.6 419 43.7
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.4e-64 251.1 399 44.4
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.1e-64 250.0 422 43.4
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 4.1e-64 249.6 303 53.5
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.0e-63 247.3 425 40.5
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 7.7e-63 245.4 359 44.8
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 1.7e-62 244.2 412 43.2
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 3.3e-61 240.0 404 43.8
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.8e-60 236.9 407 42.8
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 6.1e-60 235.7 322 46.3
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 6.1e-60 235.7 312 47.4
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 8.0e-60 235.3 340 47.1
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 8.3e-57 225.3 315 46.3
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.3e-54 218.0 341 44.6
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.7e-54 217.6 414 40.8
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.7e-54 217.6 360 41.4
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.7e-54 217.6 316 45.9
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 4.3e-53 213.0 410 39.0
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 4.3e-53 213.0 322 46.0
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 7.3e-53 212.2 341 44.0
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 7.3e-53 212.2 321 45.8
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 2.8e-52 210.3 319 45.8
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 4.7e-52 209.5 276 48.6
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.4e-51 208.0 341 41.3
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.8e-51 207.6 339 41.9
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 4.0e-51 206.5 308 44.2
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 8.9e-51 205.3 302 46.0
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 8.9e-51 205.3 331 43.2
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 8.9e-51 205.3 400 40.0
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.5e-50 204.5 343 42.0
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 2.0e-50 204.1 366 42.1
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 2.6e-50 203.8 398 38.4
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 7.5e-50 202.2 492 35.2
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.1e-48 198.4 285 47.4
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 1.9e-48 197.6 429 36.1
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 2.4e-48 197.2 385 39.5
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 9.2e-48 195.3 355 38.6
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.0e-46 191.8 326 42.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 5.0e-46 189.5 333 40.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 8.6e-46 188.7 349 40.7
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 1.2e-44 184.9 376 39.6
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.4e-43 181.4 266 45.5
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 1.8e-43 181.0 328 41.5
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 2.3e-43 180.6 308 42.9
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.4e-40 171.4 304 39.1
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 1.9e-40 171.0 397 35.5
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.2e-39 168.3 250 44.8
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 3.0e-38 163.7 311 38.6
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 3.9e-38 163.3 284 40.8
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 6.6e-38 162.5 307 37.8
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 6.6e-38 162.5 320 38.8
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 6.6e-38 162.5 347 37.8
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 6.6e-38 162.5 320 37.8
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 8.6e-38 162.2 331 36.3
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.5e-37 161.4 268 42.9
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 9.5e-37 158.7 312 37.5
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.2e-36 158.3 192 50.5
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.2e-36 158.3 261 44.4
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 2.1e-36 157.5 391 33.0
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.4e-35 154.8 329 35.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 4.0e-35 153.3 309 37.2
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 8.9e-35 152.1 309 36.6
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 8.9e-35 152.1 329 35.3
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 8.9e-35 152.1 329 35.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.2e-34 151.8 303 39.3
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 1.5e-34 151.4 321 35.5
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 3.4e-34 150.2 319 35.4
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 4.4e-34 149.8 320 36.6
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 7.5e-34 149.1 328 36.3
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 4.9e-33 146.4 319 36.7
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 6.4e-33 146.0 321 34.9
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 7.8e-31 139.0 332 36.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.0e-30 138.7 324 35.2
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 2.3e-30 137.5 312 36.5
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.5e-29 134.0 310 35.2
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 6.4e-25 119.4 249 36.1
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 4.2e-24 116.7 352 30.7
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 5.1e-22 109.8 284 34.5
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.1e-21 108.6 181 43.1
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 3.4e-18 97.1 202 38.6
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.4e-18 96.7 199 37.7
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 2.2e-17 94.4 155 43.2
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 2.4e-16 90.9 212 38.2
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.6e-15 88.2 208 38.5
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 4.6e-15 86.7 181 38.7
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 3.0e-14 84.0 192 33.9
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 5.1e-14 83.2 135 42.2
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 4.3e-13 80.1 116 44.0
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 6.9e-11 72.8 175 32.0
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.9e-10 68.9 179 31.3
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 6.4e-09 66.2 168 31.5
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 1.1e-08 65.5 168 31.0
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 9.3e-08 62.4 78 44.9
Dinv28069 Davidia involucrata HOM05D002346 ORTHO05D002452 6.7e-06 56.2 88 37.5


User provided reference genes

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