Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 4.1e-84 314.7 159 100.0
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.8e-68 262.7 145 92.4
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.4e-63 246.5 145 86.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 8.9e-39 164.1 146 60.3
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 8.6e-26 120.9 148 43.2
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 8.6e-26 120.9 149 44.3
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-25 120.2 148 44.6
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.3e-25 117.9 148 43.9
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.6e-24 116.7 145 45.5
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 6.2e-24 114.8 155 40.6
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.4e-23 112.8 148 41.9
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 5.2e-23 111.7 148 45.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 7.6e-22 107.8 153 44.4
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 9.9e-22 107.5 148 42.6
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.2e-21 106.3 152 45.4
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 8.4e-21 104.4 150 45.3
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.1e-20 104.0 155 40.6
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 1.4e-20 103.6 148 45.9
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.4e-20 103.6 152 43.4
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.4e-20 103.6 152 44.7
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.2e-20 102.1 155 43.9
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 9.3e-20 100.9 155 43.2
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.2e-19 100.5 151 45.7
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-19 100.5 152 38.2
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 2.1e-19 99.8 155 43.9
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.1e-19 99.8 155 43.9
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 2.1e-19 99.8 149 42.3
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.7e-19 99.4 152 44.1
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-19 99.0 152 38.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.6e-19 98.6 155 43.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-19 98.6 148 39.9
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-19 98.6 148 39.9
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-19 98.6 148 39.9
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-19 98.2 148 39.9
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 6.0e-19 98.2 161 39.8
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 7.8e-19 97.8 152 40.8
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 1.0e-18 97.4 153 43.1
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.7e-18 96.7 157 38.9
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.7e-18 96.7 153 39.2
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.7e-18 96.7 145 42.8
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-18 96.3 148 39.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-18 96.3 152 38.2
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 3.9e-18 95.5 148 42.6
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-18 95.5 144 41.0
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-18 95.5 144 41.0
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-18 95.5 148 39.2
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.9e-18 95.5 153 42.5
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.1e-17 94.0 153 39.2
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.5e-17 93.6 146 39.0
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.5e-17 93.6 160 37.5
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.5e-17 92.8 157 35.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.5e-17 92.8 152 36.8
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 2.5e-17 92.8 145 40.0
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 3.3e-17 92.4 149 39.6
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.3e-17 92.4 150 40.7
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.3e-17 92.4 152 39.5
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 7.3e-17 91.3 150 40.0
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 9.6e-17 90.9 149 38.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-16 90.5 148 36.5
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.3e-16 90.5 147 39.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.6e-16 90.1 144 38.9
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.1e-16 89.7 150 38.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.8e-16 89.4 158 38.0
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 4.8e-16 88.6 151 39.1
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 4.8e-16 88.6 145 35.9
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 6.2e-16 88.2 151 39.1
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 6.2e-16 88.2 146 38.4
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.4e-15 86.3 148 35.8
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 3.1e-15 85.9 147 38.8
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 4.0e-15 85.5 147 35.4
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.0e-15 85.5 157 37.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 5.3e-15 85.1 156 37.8
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.9e-15 84.7 155 37.4
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.0e-15 84.3 148 34.5
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 9.0e-15 84.3 156 33.3
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 9.0e-15 84.3 144 36.1
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 9.0e-15 84.3 144 36.1
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.2e-14 84.0 158 36.7
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.2e-14 84.0 147 35.4
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 3.4e-14 82.4 75 54.7
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 5.8e-14 81.6 153 38.6
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 5.8e-14 81.6 156 32.1
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 5.8e-14 81.6 164 36.6
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 5.8e-14 81.6 155 37.4
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.3e-13 80.5 157 37.6
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.3e-13 80.5 147 35.4
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.7e-13 80.1 150 34.7
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.2e-13 79.7 150 34.7
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 3.8e-13 79.0 152 34.9
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 6.4e-13 78.2 147 34.7
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 6.4e-13 78.2 157 36.9
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.4e-12 77.0 150 36.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.4e-12 76.3 152 34.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.4e-12 76.3 158 34.2
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 5.4e-12 75.1 148 35.1
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 5.4e-12 75.1 141 33.3
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.4e-12 75.1 161 35.4
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 7.1e-12 74.7 149 36.9
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 7.1e-12 74.7 153 33.3
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-11 73.9 148 36.5
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-11 73.6 152 36.2
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-11 73.6 153 33.3
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.6e-11 73.6 155 35.5
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.6e-11 73.6 155 35.5
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.6e-11 73.6 147 32.7
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.1e-11 73.2 154 34.4
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.7e-11 72.8 70 52.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.6e-11 72.0 152 32.2
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-10 70.9 154 33.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.0e-10 70.9 154 33.8
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.3e-10 70.5 157 34.4
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.3e-10 70.5 154 33.1
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 1.3e-10 70.5 152 34.9
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-10 70.1 149 33.6
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.7e-10 70.1 141 37.6
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.7e-10 70.1 145 36.6
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.0e-10 69.3 159 33.3
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 3.9e-10 68.9 145 33.1
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 3.9e-10 68.9 145 33.1
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 3.9e-10 68.9 63 49.2
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 3.9e-10 68.9 76 47.4
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 5.1e-10 68.6 159 32.7
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 5.1e-10 68.6 152 32.9
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 8.7e-10 67.8 155 34.2
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-09 67.4 57 56.1
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-09 67.4 57 56.1
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 2.5e-09 66.2 144 34.7
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.3e-09 65.9 156 31.4
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.3e-09 65.9 147 32.7
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.3e-09 65.5 153 29.4
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 5.6e-09 65.1 147 32.0
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 7.3e-09 64.7 108 38.0
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 7.3e-09 64.7 108 38.0
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 7.3e-09 64.7 153 31.4
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 9.6e-09 64.3 157 29.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 9.6e-09 64.3 47 66.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-08 63.9 155 32.3
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.3e-08 63.9 147 32.0
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-08 63.9 155 32.3
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.6e-08 63.5 139 33.1
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.6e-08 63.5 144 34.7
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.8e-08 62.8 108 37.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.8e-08 62.8 144 31.9
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.8e-08 62.8 153 34.0
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 4.8e-08 62.0 146 32.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.2e-08 61.6 153 32.0
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-07 60.8 66 43.9
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-07 60.8 66 43.9
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-07 60.8 145 31.0
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-07 60.1 148 31.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-07 60.1 147 30.6
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.8e-07 60.1 148 31.1
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.8e-07 60.1 147 30.6
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 3.1e-07 59.3 126 32.5
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 6.9e-07 58.2 148 30.4
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 6.9e-07 58.2 81 42.0
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 6.9e-07 58.2 81 42.0
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 6.9e-07 58.2 52 50.0
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 6.9e-07 58.2 142 33.1
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 6.9e-07 58.2 142 32.4
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 9.0e-07 57.8 150 32.0
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 1.2e-06 57.4 154 32.5
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-06 57.4 153 32.0
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.2e-06 57.4 41 61.0
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.2e-06 57.4 146 30.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.5e-06 57.0 44 61.4
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 2.0e-06 56.6 54 50.0
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 3.4e-06 55.8 146 31.5
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 4.5e-06 55.5 48 56.2
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 7.6e-06 54.7 46 56.5
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 9.9e-06 54.3 55 45.5


User provided reference genes

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