Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 3.7e-97 358.2 183 100.0
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 2.6e-90 335.5 203 86.7
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 9.8e-82 307.0 169 89.3
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 3.8e-78 295.0 174 82.2
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 9.5e-77 290.4 175 80.0
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 3.6e-76 288.5 183 76.0
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 6.1e-76 287.7 184 77.7
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 6.1e-76 287.7 182 76.9
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 1.8e-75 286.2 158 91.1
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 3.0e-75 285.4 178 76.4
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 6.8e-75 284.3 181 77.3
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 6.8e-75 284.3 174 79.3
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 1.2e-74 283.5 183 75.4
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 3.7e-73 278.5 165 80.0
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 1.4e-72 276.6 170 78.8
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 3.2e-72 275.4 181 74.0
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 3.2e-72 275.4 182 73.6
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 7.0e-72 274.2 179 73.7
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 4.6e-71 271.6 192 71.4
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 4.6e-71 271.6 179 74.3
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 7.8e-71 270.8 183 72.7
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.0e-70 270.4 187 70.6
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 1.0e-70 270.4 187 70.6
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 1.3e-70 270.0 168 77.4
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.7e-70 269.6 170 76.5
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 2.3e-70 269.2 183 71.0
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 3.0e-70 268.9 189 73.5
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 3.9e-70 268.5 181 71.8
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 6.6e-70 267.7 181 71.3
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 8.6e-70 267.3 170 75.9
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 4.3e-69 265.0 183 69.4
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 4.3e-69 265.0 170 75.9
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 5.6e-69 264.6 181 70.7
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 5.6e-69 264.6 167 74.9
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 1.2e-68 263.5 180 71.7
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 3.6e-68 261.9 169 75.7
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 1.1e-67 260.4 171 70.8
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 1.8e-67 259.6 178 74.2
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 2.3e-67 259.2 171 71.9
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 3.1e-67 258.8 171 75.4
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 2.0e-66 256.1 178 69.1
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 2.6e-66 255.8 178 70.2
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 2.6e-66 255.8 178 69.1
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 3.4e-66 255.4 178 69.1
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 4.4e-66 255.0 179 70.9
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 5.8e-66 254.6 184 67.4
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 7.5e-66 254.2 178 70.8
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 7.5e-66 254.2 174 70.1
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 1.3e-65 253.4 178 68.0
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 1.3e-65 253.4 178 69.7
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 2.2e-65 252.7 178 69.7
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 2.9e-65 252.3 178 68.5
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 2.9e-65 252.3 177 68.4
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 3.7e-65 251.9 178 69.7
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 3.7e-65 251.9 184 66.8
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 4.9e-65 251.5 172 70.3
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 4.9e-65 251.5 172 70.3
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 8.3e-65 250.8 161 75.8
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 1.9e-64 249.6 169 71.0
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 3.2e-64 248.8 157 76.4
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 1.6e-63 246.5 165 70.3
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 7.8e-63 244.2 158 73.4
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 5.0e-62 241.5 158 71.5
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 6.6e-62 241.1 168 66.7
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 1.2e-60 236.9 160 70.6
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 3.6e-60 235.3 138 81.9
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 6.2e-60 234.6 166 65.7
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 6.2e-60 234.6 162 67.3
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 8.1e-60 234.2 158 71.5
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 1.4e-59 233.4 174 66.7
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 1.8e-59 233.0 167 66.5
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 2.3e-59 232.6 158 70.9
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 2.3e-59 232.6 155 74.8
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 8.9e-59 230.7 177 63.8
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 8.9e-59 230.7 183 63.4
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 3.4e-58 228.8 179 67.6
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 8.3e-57 224.2 171 64.9
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 2.5e-53 212.6 157 65.0
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 3.3e-53 212.2 262 46.6
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 9.5e-53 210.7 167 65.9
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 4.7e-52 208.4 166 66.9
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.3e-49 200.3 119 79.8
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 1.1e-48 197.2 134 70.1
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 1.1e-48 197.2 161 55.9
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 2.4e-48 196.1 161 55.3
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 6.6e-46 188.0 162 62.3
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 1.1e-45 187.2 173 53.2
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 5.6e-45 184.9 189 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 3.6e-44 182.2 156 53.8
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 6.9e-43 177.9 125 68.0
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 6.9e-43 177.9 158 52.5
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 2.0e-42 176.4 120 70.0
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 1.9e-40 169.9 167 49.1
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 2.4e-40 169.5 131 59.5
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 5.4e-40 168.3 121 67.8
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 1.6e-39 166.8 112 69.6
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 2.1e-39 166.4 128 63.3
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 3.5e-39 165.6 132 57.6
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 6.0e-39 164.9 109 73.4
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 1.7e-38 163.3 134 63.4
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 3.0e-38 162.5 107 72.9
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 8.7e-38 161.0 162 50.0
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 1.1e-37 160.6 112 67.0
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 3.1e-35 152.5 97 72.2
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 1.1e-32 144.1 88 76.1
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 1.2e-31 140.6 102 67.6
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 1.3e-30 137.1 98 68.4
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 1.5e-29 133.7 97 66.0
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 2.5e-29 132.9 130 53.1
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.1e-27 127.5 131 55.7
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 4.5e-26 122.1 75 81.3
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 7.9e-23 111.3 140 40.7
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.7e-20 102.4 78 61.5
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.5e-18 97.1 155 33.5
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 1.4e-16 90.5 83 49.4
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 6.0e-15 85.1 49 83.7
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 1.4e-11 73.9 49 71.4
AT5G10605 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 6.7e-06 55.1 36 72.2


User provided reference genes

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