Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 5.9e-52 207.2 102 100.0
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 1.4e-50 202.6 102 99.0
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 1.4e-45 186.0 102 90.2
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 3.4e-31 138.3 103 74.8
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 2.5e-18 95.5 106 55.7
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 8.9e-16 87.0 110 46.4
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.8e-13 79.3 94 45.7
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 3.2e-13 78.6 102 45.1
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 7.0e-13 77.4 92 45.7
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 9.2e-13 77.0 108 50.9
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.2e-12 76.6 95 45.3
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.6e-12 76.3 73 52.1
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 2.0e-12 75.9 98 42.9
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.0e-12 75.9 89 44.9
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.0e-12 75.9 89 44.9
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.0e-12 75.9 89 44.9
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 3.5e-12 75.1 104 48.1
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.5e-12 75.1 96 40.6
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 3.5e-12 75.1 98 44.9
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 3.5e-12 75.1 95 46.3
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.5e-12 75.1 99 47.5
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 4.6e-12 74.7 82 46.3
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.6e-12 74.7 91 47.3
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.6e-12 74.7 91 47.3
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.8e-12 73.9 67 53.7
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 7.8e-12 73.9 97 45.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 7.8e-12 73.9 89 44.9
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.0e-11 73.6 91 46.2
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.3e-11 73.2 100 49.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.3e-11 73.2 106 43.4
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 1.3e-11 73.2 100 46.0
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.7e-11 72.8 99 45.5
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.3e-11 72.4 102 44.1
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.0e-11 72.0 98 49.0
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 3.0e-11 72.0 100 45.0
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.6e-11 70.9 67 52.2
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 6.6e-11 70.9 97 44.3
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 6.6e-11 70.9 100 43.0
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 6.6e-11 70.9 101 42.6
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 8.6e-11 70.5 63 57.1
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 8.6e-11 70.5 98 43.9
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-10 70.1 66 54.5
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.1e-10 70.1 100 43.0
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.1e-10 70.1 101 42.6
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.5e-10 69.7 66 51.5
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.5e-10 69.7 111 40.5
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.5e-10 69.7 99 47.5
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.5e-10 69.7 95 45.3
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.5e-10 69.7 95 45.3
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-10 69.3 74 48.6
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.9e-10 69.3 82 48.8
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 2.5e-10 68.9 100 45.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.3e-10 68.6 60 56.7
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.3e-10 68.6 99 42.4
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.3e-10 68.6 90 41.1
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.3e-10 68.6 108 48.1
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 3.3e-10 68.6 107 43.9
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 3.3e-10 68.6 73 47.9
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 3.3e-10 68.6 71 47.9
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 4.3e-10 68.2 69 47.8
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 4.3e-10 68.2 66 53.0
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.6e-10 67.8 108 48.1
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 5.6e-10 67.8 107 40.2
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 5.6e-10 67.8 98 37.8
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 7.3e-10 67.4 69 47.8
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 7.3e-10 67.4 108 47.2
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 7.3e-10 67.4 108 47.2
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.3e-10 67.4 96 42.7
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 7.3e-10 67.4 105 43.8
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 9.5e-10 67.0 62 56.5
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 9.5e-10 67.0 69 46.4
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.5e-10 67.0 102 39.2
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.2e-09 66.6 103 41.7
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.2e-09 66.6 95 41.1
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-09 66.6 102 41.2
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.2e-09 66.6 95 38.9
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 1.2e-09 66.6 60 50.0
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 1.2e-09 66.6 60 53.3
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.6e-09 66.2 69 46.4
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.6e-09 66.2 108 39.8
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.6e-09 66.2 73 49.3
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.6e-09 66.2 73 49.3
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 2.1e-09 65.9 83 42.2
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.1e-09 65.9 95 41.1
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 2.1e-09 65.9 100 43.0
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.8e-09 65.5 95 43.2
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 2.8e-09 65.5 99 44.4
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 2.8e-09 65.5 74 48.6
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 3.6e-09 65.1 74 54.1
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 4.7e-09 64.7 73 49.3
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 6.2e-09 64.3 103 38.8
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 6.2e-09 64.3 105 39.0
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.2e-09 64.3 67 53.7
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 6.2e-09 64.3 102 44.1
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 6.2e-09 64.3 76 46.1
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 8.0e-09 63.9 89 41.6
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 8.0e-09 63.9 74 48.6
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 8.0e-09 63.9 74 48.6
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 8.0e-09 63.9 94 44.7
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 8.0e-09 63.9 79 48.1
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 1.1e-08 63.5 100 41.0
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.4e-08 63.2 109 44.0
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.4e-08 63.2 109 44.0
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.4e-08 63.2 107 41.1
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.4e-08 63.2 99 43.4
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 1.4e-08 63.2 81 42.0
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 1.8e-08 62.8 75 50.7
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.8e-08 62.8 60 50.0
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 2.3e-08 62.4 83 42.2
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 3.1e-08 62.0 60 50.0
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.1e-08 62.0 61 49.2
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 3.1e-08 62.0 68 48.5
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 4.0e-08 61.6 103 36.9
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 4.0e-08 61.6 106 40.6
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.0e-08 61.6 103 36.9
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 4.0e-08 61.6 61 49.2
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.0e-08 61.6 90 40.0
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 5.2e-08 61.2 66 48.5
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 5.2e-08 61.2 107 40.2
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 5.2e-08 61.2 92 41.3
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.2e-08 61.2 91 38.5
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 5.2e-08 61.2 75 50.7
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.2e-08 61.2 68 47.1
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.8e-08 60.8 77 44.2
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 6.8e-08 60.8 82 43.9
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 6.8e-08 60.8 83 39.8
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 6.8e-08 60.8 61 47.5
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 6.8e-08 60.8 96 42.7
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 6.8e-08 60.8 68 48.5
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 6.8e-08 60.8 67 52.2
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 8.9e-08 60.5 77 45.5
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 8.9e-08 60.5 75 44.0
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-07 60.1 79 43.0
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.2e-07 60.1 74 51.4
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.5e-07 59.7 65 50.8
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.0e-07 59.3 107 39.3
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 3.4e-07 58.5 95 41.1
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.4e-07 58.5 106 40.6
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.4e-07 58.5 62 53.2
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 4.4e-07 58.2 75 44.0
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.4e-07 58.2 62 53.2
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 7.5e-07 57.4 96 40.6
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.5e-07 57.4 62 53.2
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 7.5e-07 57.4 77 49.4
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 9.8e-07 57.0 109 38.5
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 1.3e-06 56.6 54 50.0
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 1.3e-06 56.6 119 37.8
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.3e-06 56.6 91 40.7
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 1.3e-06 56.6 73 43.8
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 1.3e-06 56.6 66 47.0
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.7e-06 56.2 75 42.7
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 1.7e-06 56.2 76 44.7
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 1.7e-06 56.2 84 41.7
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.2e-06 55.8 78 43.6
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.2e-06 55.8 106 38.7
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.9e-06 55.5 93 41.9
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.9e-06 55.5 62 48.4
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 4.9e-06 54.7 63 47.6
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 4.9e-06 54.7 57 52.6
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 4.9e-06 54.7 58 53.4
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 6.4e-06 54.3 96 40.6
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 6.4e-06 54.3 106 39.6
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 6.4e-06 54.3 61 39.3
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 8.3e-06 53.9 74 44.6
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 8.3e-06 53.9 68 48.5


User provided reference genes

Program Settings