Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.2e-209 733.0 388 100.0
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.4e-178 629.8 397 87.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 5.5e-167 591.3 388 83.8
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 4.1e-138 495.4 388 72.7
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 3.0e-96 356.3 387 54.0
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 8.1e-94 348.2 425 50.4
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.8e-93 347.1 410 51.5
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 2.0e-92 343.6 390 51.8
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.2e-91 340.1 390 53.6
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.4e-90 337.4 386 52.3
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 7.9e-89 331.6 383 52.5
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.9e-88 329.3 384 49.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 5.1e-88 328.9 403 50.9
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 8.7e-88 328.2 391 49.4
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.1e-87 327.8 416 49.5
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.9e-87 327.0 384 51.6
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 1.3e-86 324.3 384 51.0
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.3e-86 324.3 394 52.3
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 4.8e-86 322.4 356 53.4
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 2.4e-85 320.1 394 50.3
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.0e-85 319.3 404 47.5
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 6.9e-85 318.5 382 50.0
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 1.0e-83 314.7 385 47.8
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 1.3e-83 314.3 390 49.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 3.8e-83 312.8 392 48.2
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.6e-81 307.4 406 49.0
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 6.0e-81 305.4 409 46.7
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.1e-79 301.2 393 47.6
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 1.9e-79 300.4 400 47.0
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.3e-79 299.7 280 60.7
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 5.7e-79 298.9 382 47.1
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 9.6e-79 298.1 382 50.5
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 9.6e-79 298.1 400 45.5
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 3.7e-78 296.2 397 46.6
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.1e-77 294.7 356 50.3
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.1e-77 294.7 406 47.5
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.4e-77 294.3 404 46.0
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.4e-77 294.3 344 50.0
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 5.3e-77 292.4 408 45.8
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 6.9e-77 292.0 384 46.6
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 2.6e-76 290.0 399 46.4
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.4e-76 289.7 409 47.7
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 3.4e-76 289.7 390 46.2
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.5e-76 289.3 390 44.6
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 6.5e-75 285.4 403 45.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 2.5e-74 283.5 406 44.3
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.2e-74 283.1 405 45.2
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 3.2e-74 283.1 416 43.5
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 7.1e-74 282.0 216 68.5
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 9.3e-74 281.6 400 45.8
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 9.3e-74 281.6 409 44.3
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 4.6e-73 279.3 343 49.3
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 7.9e-73 278.5 265 58.9
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.0e-72 278.1 383 43.6
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 1.3e-72 277.7 362 47.8
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 1.3e-72 277.7 403 43.9
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 3.0e-72 276.6 406 45.3
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.1e-71 274.6 408 44.9
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.5e-71 274.2 351 48.7
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 4.3e-71 272.7 407 43.7
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 5.7e-71 272.3 394 43.4
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.3e-70 271.2 421 42.5
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 3.7e-70 269.6 272 53.7
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 3.7e-70 269.6 364 45.6
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 6.3e-70 268.9 341 47.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.1e-69 268.1 437 43.5
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.4e-69 267.7 245 59.2
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.4e-69 267.7 352 48.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.5e-68 264.2 210 66.2
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.6e-68 263.5 391 43.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 4.5e-68 262.7 405 42.7
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.9e-67 260.0 370 44.1
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.9e-67 260.0 349 46.4
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.4e-66 257.7 390 42.6
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 9.4e-66 255.0 437 39.4
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.2e-65 254.6 317 47.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 1.6e-65 254.2 370 45.4
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.6e-65 254.2 368 44.3
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 2.7e-65 253.4 346 46.0
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.7e-65 253.4 246 56.9
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.4e-64 251.1 379 44.9
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 8.8e-64 248.4 376 43.6
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.0e-63 247.3 393 42.2
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 9.7e-63 245.0 252 55.6
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 9.7e-63 245.0 372 43.0
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 3.4e-60 236.5 369 41.2
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 8.5e-59 231.9 310 46.1
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.1e-58 231.5 365 43.0
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-58 231.5 365 43.0
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.1e-58 231.5 365 43.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 4.2e-58 229.6 252 52.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.2e-57 228.0 373 41.6
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-57 228.0 422 37.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.6e-57 227.6 391 39.4
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.7e-57 226.9 393 38.7
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.4e-56 224.6 255 52.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.0e-56 223.4 391 39.6
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 2.8e-54 216.9 187 63.1
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 3.1e-53 213.4 373 41.3
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 5.3e-53 212.6 389 38.0
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 2.6e-52 210.3 344 41.9
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.5e-51 205.7 185 61.1
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 6.5e-51 205.7 263 47.1
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.5e-50 204.5 406 38.9
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.2e-50 203.4 416 36.1
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 2.7e-49 200.3 310 40.6
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.7e-49 199.5 378 36.2
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 2.6e-47 193.7 372 38.2
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 1.3e-46 191.4 343 39.7
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.7e-46 191.0 353 39.7
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.7e-46 191.0 224 45.5
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 4.8e-46 189.5 219 50.7
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 2.4e-45 187.2 182 56.0
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 7.0e-45 185.7 214 44.9
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 7.7e-44 182.2 386 36.8
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 8.5e-43 178.7 342 37.7
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 4.2e-42 176.4 283 43.1
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 1.2e-41 174.9 197 52.3
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.2e-39 168.3 279 40.9
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 3.7e-38 163.3 416 34.4
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 6.3e-38 162.5 181 51.4
MELO3C026928.2 Cucumis melo HOM05D004411 ORTHO05D005569 4.1e-37 159.8 104 83.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 1.6e-36 157.9 283 38.5
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 7.7e-36 155.6 275 40.7
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 4.2e-34 149.8 238 47.1
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.6e-33 146.7 204 40.2
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 3.0e-32 143.7 170 47.6
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.4e-29 134.8 120 59.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.0e-24 118.6 93 66.7
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.8e-24 117.9 198 37.4
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 6.8e-24 115.9 209 40.2
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.2e-23 115.2 209 40.2
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 3.7e-22 110.2 117 51.3
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.1e-21 108.6 125 49.6
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.1e-21 108.6 125 49.6
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 1.8e-21 107.8 239 34.3
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 4.6e-20 103.2 90 57.8
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.3e-19 101.7 82 61.0
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 3.9e-19 100.1 115 52.2
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 8.6e-19 99.0 94 54.3
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.9e-18 97.8 86 60.5
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.6e-17 94.7 244 31.6
MELO3C031645.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.0e-15 87.8 63 77.8
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 3.7e-14 83.6 76 55.3
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 4.9e-14 83.2 86 50.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 8.3e-14 82.4 202 31.7
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.4e-13 80.9 55 67.3
MELO3C031858.2 Cucumis melo HOM05D004411 ORTHO05D005569 3.5e-12 77.0 127 45.7
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 3.9e-11 73.6 81 46.9
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 2.8e-09 67.4 156 31.4
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 6.8e-08 62.8 114 38.6
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 8.9e-08 62.4 110 36.4
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 4.4e-07 60.1 102 34.3
MELO3C033219.2 Cucumis melo HOM05D004411 ORTHO05D005569 7.5e-07 59.3 41 80.5


User provided reference genes

Program Settings