Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.7e-167 592.0 322 100.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 5.1e-158 561.2 331 94.9
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 4.9e-137 491.5 331 83.1
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 9.3e-136 487.3 331 85.2
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 2.8e-132 475.7 331 75.5
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.7e-95 352.8 325 56.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.1e-93 347.4 329 62.0
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.1e-91 340.9 329 53.8
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.0e-90 336.7 331 58.6
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.9e-89 332.8 330 60.6
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 9.4e-88 327.8 329 57.4
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-87 326.6 329 57.1
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.7e-87 326.2 330 53.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.7e-87 326.2 327 52.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.7e-87 326.2 332 59.3
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 3.6e-87 325.9 325 54.8
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 8.0e-87 324.7 331 58.9
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.0e-86 324.3 331 58.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.4e-85 318.9 323 52.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 7.5e-85 318.2 323 51.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 9.8e-85 317.8 332 58.1
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.8e-84 316.2 324 52.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.1e-83 312.4 332 59.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 3.5e-82 309.3 332 50.9
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.7e-81 307.0 331 52.3
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 6.5e-81 305.1 333 58.0
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.5e-80 303.1 332 51.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.5e-80 303.1 333 58.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.5e-80 302.0 335 51.3
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 7.2e-80 301.6 329 53.8
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-79 299.3 337 57.6
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.5e-77 293.9 326 50.3
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.0e-77 293.5 328 50.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.6e-77 293.1 330 49.4
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.4e-77 292.7 332 54.2
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 4.4e-77 292.4 384 46.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.7e-77 292.0 332 48.2
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.7e-76 290.4 338 49.4
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.7e-76 290.4 332 50.9
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.1e-75 287.7 332 47.6
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.4e-75 287.3 331 46.2
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.1e-75 285.8 332 51.8
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.6e-74 283.9 339 51.9
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.7e-74 283.1 332 50.9
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 5.9e-74 282.0 332 52.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.9e-74 282.0 332 47.3
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.0e-73 278.9 333 49.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 5.0e-73 278.9 320 55.0
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 6.6e-73 278.5 334 48.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-71 274.2 333 54.7
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.1e-71 273.5 337 49.3
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.3e-70 270.0 333 50.8
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.0e-70 269.2 320 50.0
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.0e-69 266.9 331 45.9
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.0e-69 266.9 284 58.8
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.0e-69 266.9 284 58.8
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.6e-69 266.5 331 46.8
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 4.4e-69 265.8 332 44.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.2e-68 263.5 331 47.7
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 4.9e-68 262.3 331 47.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 8.3e-68 261.5 331 47.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.4e-67 260.0 330 46.4
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.4e-67 260.0 333 46.8
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 3.2e-67 259.6 331 51.7
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 9.2e-67 258.1 334 46.7
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.0e-66 256.9 332 46.4
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.5e-66 256.1 403 43.9
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.0e-65 253.1 332 47.9
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 3.9e-65 252.7 329 50.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 8.6e-65 251.5 341 50.7
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-64 250.8 333 51.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-64 250.8 333 51.7
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.5e-64 250.0 332 50.0
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.5e-64 250.0 389 41.6
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 3.3e-64 249.6 331 48.6
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 7.3e-64 248.4 332 43.4
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.3e-64 248.4 328 44.2
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 7.3e-64 248.4 328 50.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.0e-62 242.7 332 50.3
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.0e-61 240.4 332 50.0
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 5.8e-61 238.8 389 40.4
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.2e-60 236.9 332 45.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.4e-59 234.2 332 45.5
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.2e-59 233.0 323 46.7
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 9.2e-59 231.5 330 46.1
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.6e-58 230.7 326 42.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.6e-58 229.2 324 46.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.0e-57 228.0 390 46.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.0e-57 226.5 307 45.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 5.0e-57 225.7 323 51.1
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.1e-56 224.6 323 44.6
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-55 220.7 335 46.3
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.1e-55 218.4 327 41.3
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.8e-54 215.3 328 46.0
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 8.3e-52 208.4 371 37.2
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 7.1e-51 205.3 330 46.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.6e-50 204.1 348 40.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-50 203.8 303 43.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.1e-50 203.8 310 45.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 4.6e-50 202.6 331 48.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.8e-50 201.8 288 43.4
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.0e-49 201.4 274 42.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-49 201.1 334 47.0
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.7e-49 200.7 338 37.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 8.6e-49 198.4 334 38.6
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.5e-48 197.6 270 45.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 3.3e-48 196.4 334 46.4
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 4.3e-48 196.1 333 44.4
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.6e-48 195.7 302 46.7
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.2e-47 194.5 381 36.2
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.8e-47 193.4 363 36.1
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.6e-47 193.0 302 48.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.7e-47 192.6 363 43.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 8.1e-47 191.8 302 45.4
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 1.8e-46 190.7 341 39.3
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 3.1e-46 189.9 331 37.5
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.2e-46 189.1 308 45.8
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 6.8e-46 188.7 311 45.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.2e-45 188.0 365 36.7
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 9.9e-45 184.9 278 41.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.9e-44 182.6 308 39.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.0e-42 175.6 389 34.2
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 7.8e-42 175.3 305 43.9
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.0e-41 174.9 330 39.4
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.0e-41 174.9 330 39.4
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.0e-41 174.9 309 44.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-41 174.5 195 49.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.6e-41 172.2 122 69.7
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.3e-40 169.9 263 46.4
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.1e-38 164.9 262 46.6
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.4e-38 163.7 307 43.0
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.4e-38 163.7 333 40.2
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.2e-38 162.5 293 36.2
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 6.9e-38 162.2 123 65.0
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 8.4e-36 155.2 210 41.0
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.2e-35 152.9 365 32.3
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 5.1e-33 146.0 316 34.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.1e-32 144.8 152 48.7
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-31 141.4 156 53.2
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.3e-30 136.0 159 45.3
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.3e-30 136.0 159 45.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-29 134.8 152 47.4
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 9.9e-29 131.7 165 39.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.7e-28 131.0 329 30.7
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-28 130.6 124 54.8
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 4.9e-28 129.4 301 34.2
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 6.4e-28 129.0 176 42.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 9.3e-27 125.2 249 42.6
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-24 118.2 193 42.5
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.5e-24 117.9 184 40.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.1e-23 114.0 368 26.1
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.6e-23 113.2 231 36.8
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.6e-23 113.2 181 43.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 8.1e-23 112.1 264 38.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.4e-22 110.5 257 33.1
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 2.4e-19 100.5 207 34.8
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.2e-19 99.8 175 40.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-18 97.8 135 46.7
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 4.6e-18 96.3 136 47.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 6.0e-18 95.9 84 57.1
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.5e-16 91.3 266 31.2
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 7.4e-16 89.0 99 46.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.3e-15 88.2 105 48.6
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.1e-15 87.4 124 41.1
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.1e-15 87.4 124 41.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.6e-13 80.5 48 75.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 6.5e-12 75.9 141 38.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-10 71.2 60 58.3
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.3e-09 68.2 322 26.4
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-09 67.8 51 62.7
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 3.9e-09 66.6 273 25.6
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.9e-08 64.3 86 38.4
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 1.4e-06 58.2 85 36.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 3.1e-06 57.0 121 34.7


User provided reference genes

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