Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 3.3e-53 211.5 107 100.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 1.1e-48 196.4 107 90.7
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 9.6e-37 156.8 105 76.2
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 3.5e-23 111.7 105 56.2
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 6.0e-23 110.9 109 57.8
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 7.9e-23 110.5 89 65.2
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 3.0e-22 108.6 110 54.5
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 3.9e-22 108.2 102 57.8
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 5.1e-22 107.8 104 56.7
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 5.1e-22 107.8 108 54.6
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 8.7e-22 107.1 123 54.5
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 1.1e-21 106.7 117 52.1
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.5e-21 106.3 105 58.1
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 1.9e-21 105.9 92 59.8
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.9e-21 105.9 104 55.8
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.9e-21 105.9 109 56.9
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.9e-21 105.9 92 58.7
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 2.5e-21 105.5 115 54.8
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 2.5e-21 105.5 114 57.9
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.3e-21 105.1 107 56.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 4.3e-21 104.8 108 57.4
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 4.3e-21 104.8 102 57.8
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 5.6e-21 104.4 88 63.6
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.6e-20 102.8 103 54.4
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 2.1e-20 102.4 109 53.2
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 2.8e-20 102.1 89 61.8
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.7e-20 101.7 90 62.2
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 4.8e-20 101.3 68 73.5
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 6.2e-20 100.9 123 49.6
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 8.1e-20 100.5 129 48.8
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 8.1e-20 100.5 107 51.4
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.1e-19 100.1 106 49.1
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.1e-19 100.1 120 54.2
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 1.4e-19 99.8 90 62.2
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 1.4e-19 99.8 115 53.9
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 1.4e-19 99.8 80 62.5
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.8e-19 99.4 89 56.2
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 1.8e-19 99.4 93 59.1
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 2.4e-19 99.0 93 59.1
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 2.4e-19 99.0 92 56.5
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 5.3e-19 97.8 99 53.5
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 9.0e-19 97.1 91 57.1
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.2e-18 96.7 91 57.1
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 3.4e-18 95.1 99 51.5
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 3.4e-18 95.1 90 60.0
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 4.5e-18 94.7 105 49.5
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 4.5e-18 94.7 72 65.3
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 5.8e-18 94.4 80 58.8
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 5.8e-18 94.4 108 50.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 7.6e-18 94.0 94 54.3
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 7.6e-18 94.0 105 50.5
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 7.6e-18 94.0 93 52.7
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.3e-17 93.2 91 53.8
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.7e-17 92.8 109 49.5
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.7e-17 92.8 86 61.6
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 2.2e-17 92.4 112 51.8
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 2.9e-17 92.0 79 60.8
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.9e-17 92.0 63 69.8
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 3.8e-17 91.7 85 56.5
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 4.9e-17 91.3 111 50.5
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 4.9e-17 91.3 59 71.2
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 6.4e-17 90.9 91 53.8
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 6.4e-17 90.9 83 56.6
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 8.4e-17 90.5 94 52.1
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 8.4e-17 90.5 119 50.4
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 8.4e-17 90.5 79 64.6
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.1e-16 90.1 94 52.1
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.1e-16 90.1 92 54.3
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 1.4e-16 89.7 95 55.8
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 1.4e-16 89.7 95 55.8
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 1.4e-16 89.7 95 55.8
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 1.4e-16 89.7 60 71.7
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 1.4e-16 89.7 108 54.6
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.9e-16 89.4 95 54.7
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.9e-16 89.4 94 54.3
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 1.9e-16 89.4 96 52.1
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 2.4e-16 89.0 90 52.2
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 2.4e-16 89.0 90 52.2
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 2.4e-16 89.0 121 49.6
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 2.4e-16 89.0 77 59.7
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 2.4e-16 89.0 96 51.0
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 3.2e-16 88.6 47 80.9
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 4.2e-16 88.2 91 52.7
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 4.2e-16 88.2 96 52.1
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 5.5e-16 87.8 96 51.0
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 7.1e-16 87.4 50 80.0
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 9.3e-16 87.0 91 51.6
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 9.3e-16 87.0 50 78.0
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 9.3e-16 87.0 83 56.6
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 1.6e-15 86.3 83 57.8
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.6e-15 86.3 83 57.8
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 3.5e-15 85.1 96 51.0
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 3.5e-15 85.1 102 50.0
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 4.6e-15 84.7 110 50.0
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 7.9e-15 84.0 52 73.1
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.3e-14 83.2 107 50.5
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 3.0e-14 82.0 105 49.5
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.3e-13 78.6 58 67.2
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 7.4e-13 77.4 57 66.7
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.1e-12 75.9 68 61.8
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 3.7e-12 75.1 84 50.0
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 1.4e-11 73.2 94 48.9
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-11 73.2 94 48.9
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 1.5e-10 69.7 82 51.2
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 2.6e-10 68.9 113 46.0
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 2.6e-10 68.9 68 52.9
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 4.5e-10 68.2 91 48.4
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 7.1e-08 60.8 92 43.5
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 9.3e-08 60.5 42 64.3
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 9.3e-08 60.5 92 42.4
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.6e-07 59.7 78 47.4
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 1.8e-06 56.2 50 62.0
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 3.0e-06 55.5 61 54.1


User provided reference genes

Program Settings