Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 1.6e-74 282.7 146 100.0
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 1.6e-71 272.7 146 95.2
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 1.2e-69 266.5 146 93.2
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 1.1e-54 216.9 147 78.9
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 2.7e-50 202.2 146 74.7
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 3.5e-42 175.3 149 64.4
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.9e-40 169.5 148 67.6
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 1.9e-40 169.5 159 61.0
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 5.7e-40 167.9 146 61.6
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 7.4e-40 167.5 146 63.7
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.3e-39 166.8 148 65.5
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.6e-39 166.4 146 62.3
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 1.6e-39 166.4 113 76.1
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 2.2e-39 166.0 147 62.6
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 2.8e-39 165.6 146 61.6
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 3.7e-39 165.2 147 61.9
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 4.8e-39 164.9 147 61.2
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 4.8e-39 164.9 154 61.0
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 6.3e-39 164.5 150 61.3
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 6.3e-39 164.5 108 76.9
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 1.1e-38 163.7 150 61.3
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 1.4e-38 163.3 153 58.2
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 1.4e-38 163.3 149 63.1
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 2.4e-38 162.5 146 58.9
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 2.4e-38 162.5 98 79.6
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 3.1e-38 162.2 98 77.6
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 4.1e-38 161.8 152 59.2
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.2e-37 160.2 146 58.9
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.2e-37 160.2 146 58.9
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 1.2e-37 160.2 100 78.0
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.5e-37 159.8 122 69.7
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 1.5e-37 159.8 153 56.9
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 1.5e-37 159.8 148 60.8
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 2.0e-37 159.5 149 61.7
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 4.5e-37 158.3 146 58.2
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 4.5e-37 158.3 152 57.9
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 4.5e-37 158.3 124 66.1
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 4.5e-37 158.3 121 66.9
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 7.7e-37 157.5 109 73.4
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 7.7e-37 157.5 122 66.4
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 7.7e-37 157.5 151 59.6
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 7.7e-37 157.5 149 59.1
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 1.7e-36 156.4 130 65.4
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 1.7e-36 156.4 147 61.2
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 2.2e-36 156.0 147 58.5
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 2.9e-36 155.6 109 72.5
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 5.0e-36 154.8 136 58.8
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 6.5e-36 154.5 95 80.0
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 6.5e-36 154.5 146 58.2
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 6.5e-36 154.5 146 56.8
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 6.5e-36 154.5 147 60.5
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 2.5e-35 152.5 146 58.2
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 3.2e-35 152.1 130 62.3
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 3.6e-34 148.7 107 72.0
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 3.6e-34 148.7 98 74.5
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 3.6e-34 148.7 108 64.8
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 4.6e-34 148.3 107 68.2
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 4.6e-34 148.3 142 58.5
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 7.9e-34 147.5 108 63.9
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.4e-33 146.7 117 61.5
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 3.0e-33 145.6 145 52.4
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 3.9e-33 145.2 122 59.0
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 6.7e-33 144.4 144 56.9
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 6.7e-33 144.4 135 55.6
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 8.8e-33 144.1 96 69.8
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 8.8e-33 144.1 145 54.5
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 8.8e-33 144.1 145 54.5
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 3.3e-32 142.1 97 70.1
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 4.3e-32 141.7 141 55.3
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 5.7e-32 141.4 141 55.3
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 9.7e-32 140.6 107 64.5
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 2.2e-31 139.4 111 62.2
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 2.2e-31 139.4 107 62.6
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 8.2e-31 137.5 97 68.0
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 8.2e-31 137.5 127 55.9
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 1.1e-30 137.1 96 65.6
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 1.1e-30 137.1 143 51.7
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 1.4e-30 136.7 115 60.9
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 1.8e-30 136.3 118 57.6
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.8e-30 136.3 117 58.1
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 1.8e-30 136.3 98 69.4
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 2.4e-30 136.0 112 57.1
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 2.4e-30 136.0 139 51.1
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 2.4e-30 136.0 97 70.1
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 4.1e-30 135.2 109 59.6
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 4.1e-30 135.2 107 59.8
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 6.9e-30 134.4 146 54.1
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 9.1e-30 134.0 107 60.7
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 9.1e-30 134.0 98 66.3
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 1.2e-29 133.7 93 65.6
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 1.5e-29 133.3 93 68.8
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 2.0e-29 132.9 100 66.0
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 2.6e-29 132.5 123 56.9
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 2.6e-29 132.5 143 53.1
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 3.4e-29 132.1 149 51.7
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 1.7e-28 129.8 141 49.6
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 2.2e-28 129.4 146 52.7
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 2.9e-28 129.0 99 61.6
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 1.4e-27 126.7 143 49.7
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 3.2e-27 125.6 153 47.7
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 4.2e-27 125.2 165 45.5
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 1.6e-26 123.2 156 46.8
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 2.1e-26 122.9 95 62.1
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 3.6e-26 122.1 150 52.0
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 3.7e-23 112.1 83 65.1
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 4.8e-23 111.7 76 72.4
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 6.3e-23 111.3 223 36.8
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 7.0e-22 107.8 98 60.2
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 4.5e-21 105.1 61 80.3
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 4.2e-19 98.6 55 87.3
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 7.2e-19 97.8 106 45.3
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 1.0e-17 94.0 101 48.5
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.0e-17 94.0 110 53.6
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 1.8e-17 93.2 65 67.7
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 1.8e-14 83.2 103 50.5
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 3.1e-14 82.4 118 35.6
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 2.0e-13 79.7 96 41.7
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 3.5e-13 79.0 115 35.7
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 4.2e-11 72.0 46 71.7
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 1.2e-08 63.9 95 37.9
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 8.2e-07 57.8 96 31.2


User provided reference genes

Program Settings