Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.4e-113 412.1 206 100.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 2.4e-108 395.6 206 96.1
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.3e-90 336.7 206 82.0
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 4.9e-82 308.1 206 77.2
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.5e-62 243.4 138 87.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 2.6e-59 232.6 206 57.3
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 2.7e-56 222.6 182 61.0
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.4e-55 220.3 178 65.7
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 3.0e-55 219.2 197 59.4
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.9e-55 218.8 178 65.2
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 8.8e-55 217.6 198 58.1
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.1e-54 217.2 206 56.8
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 1.1e-54 217.2 198 57.6
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.1e-54 217.2 199 59.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 1.5e-54 216.9 184 63.0
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.0e-54 216.5 198 58.1
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 5.7e-54 214.9 197 56.9
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.3e-53 213.8 205 56.6
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 1.3e-53 213.8 198 56.1
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 2.8e-53 212.6 176 63.1
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.1e-52 209.1 180 59.4
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 5.3e-52 208.4 198 56.1
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.2e-51 207.2 184 59.8
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.2e-51 207.2 183 60.1
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 2.0e-51 206.5 185 60.0
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.0e-51 206.5 185 59.5
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.6e-51 206.1 182 61.0
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 5.9e-51 204.9 188 57.4
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.0e-50 204.1 167 58.7
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.3e-50 203.8 198 55.1
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.7e-50 203.4 160 65.0
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 2.9e-50 202.6 158 63.3
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.8e-50 202.2 181 56.9
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.8e-50 202.2 190 56.3
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 3.8e-50 202.2 190 56.3
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.8e-50 202.2 186 58.1
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 5.0e-50 201.8 173 61.8
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 8.5e-50 201.1 176 58.0
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.1e-49 200.7 172 61.6
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.1e-49 200.7 182 57.7
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 1.5e-49 200.3 188 55.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.5e-49 200.3 184 59.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 3.2e-49 199.1 277 44.0
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 4.2e-49 198.7 167 62.3
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 7.2e-49 198.0 178 57.9
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 7.2e-49 198.0 204 52.5
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.1e-48 196.4 190 55.3
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 2.1e-48 196.4 174 60.3
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 2.1e-48 196.4 167 62.3
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-48 196.1 167 61.7
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-48 196.1 167 61.7
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-48 196.1 167 61.7
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.7e-48 196.1 184 58.2
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.7e-48 196.1 199 52.8
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.6e-48 195.7 207 53.1
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 3.6e-48 195.7 198 52.5
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 4.7e-48 195.3 194 52.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.7e-48 195.3 176 58.5
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 4.7e-48 195.3 195 53.3
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 8.0e-48 194.5 176 56.8
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 1.0e-47 194.1 204 51.5
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.4e-47 193.7 173 59.5
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 2.3e-47 193.0 177 57.1
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 3.0e-47 192.6 176 58.0
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.0e-47 192.6 176 58.0
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.2e-47 191.8 179 54.7
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.2e-47 191.8 168 56.5
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 8.8e-47 191.0 178 56.2
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.0e-46 189.9 163 62.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 7.5e-46 188.0 198 53.0
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 7.5e-46 188.0 212 49.5
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 1.7e-45 186.8 193 51.8
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 4.8e-45 185.3 208 50.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.1e-44 184.1 198 49.0
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 2.4e-44 183.0 156 59.6
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 5.3e-44 181.8 184 50.0
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.0e-43 179.9 190 52.1
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 2.0e-43 179.9 180 50.0
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.7e-43 179.5 137 67.9
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 5.9e-43 178.3 163 56.4
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.3e-42 177.2 180 51.1
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.7e-42 176.8 148 60.8
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.9e-42 176.0 177 53.7
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.8e-42 175.6 161 53.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 6.5e-42 174.9 180 50.6
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.1e-41 174.1 182 51.6
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 3.2e-41 172.6 175 50.9
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 9.4e-41 171.0 178 53.4
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.2e-40 170.6 157 56.7
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.6e-40 170.2 185 48.1
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 6.1e-40 168.3 181 50.3
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 2.3e-39 166.4 174 49.4
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.3e-39 166.4 140 61.4
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 4.0e-39 165.6 180 48.3
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.2e-38 164.1 159 54.7
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.3e-37 160.6 141 56.7
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 8.3e-37 157.9 137 56.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.4e-36 157.1 175 50.9
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.2e-35 154.1 176 50.6
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-35 154.1 146 56.8
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.7e-35 152.9 158 53.2
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.5e-35 152.5 157 50.3
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 7.7e-35 151.4 139 56.1
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.9e-33 146.7 131 61.1
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 3.3e-33 146.0 192 43.2
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 5.5e-33 145.2 125 60.0
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 3.6e-32 142.5 121 60.3
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.2e-31 138.7 199 42.2
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 5.7e-30 135.2 188 44.7
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 9.8e-30 134.4 155 50.3
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 2.8e-29 132.9 141 49.6
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 3.7e-29 132.5 180 43.3
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 4.1e-28 129.0 141 49.6
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 2.3e-26 123.2 92 69.6
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-25 120.9 175 42.9
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.1e-25 120.9 175 42.9
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 2.5e-25 119.8 104 57.7
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.6e-24 115.9 99 69.7
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 3.0e-23 112.8 147 49.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.5e-22 110.5 116 51.7
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 5.8e-22 108.6 109 50.5
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 2.4e-20 103.2 183 39.3
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 4.1e-20 102.4 158 36.7
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 7.0e-20 101.7 84 59.5
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.0e-19 100.1 141 43.3
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 2.5e-17 93.2 86 58.1
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 4.7e-16 89.0 94 51.1
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.0e-14 83.6 63 63.5
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.6e-11 73.9 73 54.8
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.0e-10 68.9 72 47.2
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 6.6e-10 68.6 50 64.0
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-09 67.0 86 43.0
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 4.3e-09 65.9 134 35.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.8e-08 63.2 59 50.8


User provided reference genes

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