Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 4.0e-173 611.3 303 100.0
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 3.8e-139 498.4 264 93.6
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 3.2e-130 468.8 264 87.1
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 3.6e-129 465.3 243 95.9
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 9.8e-95 350.9 252 69.8
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.8e-93 346.7 252 69.4
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 3.5e-92 342.4 253 69.2
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.5e-92 342.0 252 68.3
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 1.7e-91 340.1 253 68.8
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 8.6e-91 337.8 253 66.8
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 8.3e-86 321.2 253 64.0
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.2e-84 317.4 251 63.3
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 7.8e-84 314.7 259 63.7
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.3e-83 313.9 250 62.4
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.7e-83 313.5 253 64.8
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 1.7e-83 313.5 240 65.0
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 2.3e-83 313.2 262 63.4
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 3.9e-83 312.4 251 65.3
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 1.1e-82 310.8 257 64.6
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 2.5e-82 309.7 268 60.8
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 4.3e-82 308.9 231 67.1
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 9.5e-82 307.8 230 69.1
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.6e-81 307.0 254 66.1
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 4.7e-81 305.4 251 63.3
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 6.2e-81 305.1 251 63.7
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 6.2e-81 305.1 254 63.0
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.3e-80 303.1 250 62.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 5.2e-80 302.0 251 63.7
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 1.2e-79 300.8 261 62.5
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 1.5e-79 300.4 254 61.4
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 2.6e-79 299.7 251 63.3
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 2.6e-79 299.7 246 64.2
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 7.5e-79 298.1 258 60.1
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 9.8e-79 297.7 251 62.5
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.9e-78 296.2 253 60.5
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 2.9e-78 296.2 250 62.0
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 3.7e-78 295.8 262 57.3
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.9e-77 293.5 257 62.6
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.2e-76 290.8 261 59.4
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.5e-76 289.3 249 63.1
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.0e-75 287.7 249 60.2
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 3.0e-75 286.2 293 54.6
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 3.0e-75 286.2 264 57.6
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 2.1e-73 280.0 251 61.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 1.1e-72 277.7 263 57.4
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 1.8e-72 276.9 250 58.0
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 3.1e-72 276.2 235 63.0
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 4.0e-72 275.8 264 54.9
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 4.0e-72 275.8 250 56.4
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 5.2e-72 275.4 253 57.7
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 5.2e-72 275.4 250 56.0
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 1.2e-71 274.2 250 56.0
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 1.5e-71 273.9 206 68.0
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.5e-71 273.9 229 63.3
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.0e-71 273.5 253 57.3
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.0e-71 273.5 233 63.5
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 2.0e-71 273.5 250 56.4
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 2.0e-71 273.5 250 54.8
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 3.4e-71 272.7 263 52.5
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 4.4e-71 272.3 250 58.8
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 7.5e-71 271.6 263 51.7
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 7.5e-71 271.6 263 51.7
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 1.3e-70 270.8 251 51.4
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-70 270.4 250 59.2
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-70 270.4 251 59.0
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.2e-70 270.0 245 55.1
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 2.9e-70 269.6 250 55.2
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 2.9e-70 269.6 240 58.3
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 2.9e-70 269.6 265 49.4
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 3.7e-70 269.2 245 54.3
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 4.9e-70 268.9 250 58.0
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 8.3e-70 268.1 267 53.2
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.9e-69 266.9 248 54.4
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.9e-69 266.9 251 58.6
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 1.2e-68 264.2 264 55.3
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 3.5e-68 262.7 244 57.4
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 4.6e-68 262.3 243 56.8
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 7.8e-68 261.5 250 54.4
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 7.8e-68 261.5 250 54.4
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 1.7e-67 260.4 249 54.2
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 3.0e-67 259.6 240 57.9
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 6.6e-67 258.5 243 56.8
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 8.6e-67 258.1 243 56.4
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 2.1e-65 253.4 276 48.9
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.4e-64 250.8 250 53.2
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 3.1e-64 249.6 248 54.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 4.0e-64 249.2 238 55.0
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 3.8e-62 242.7 229 54.6
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 3.2e-61 239.6 248 52.4
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 3.2e-61 239.6 253 51.0
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 1.6e-60 237.3 250 52.8
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 2.3e-59 233.4 188 59.0
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 8.7e-59 231.5 264 51.9
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 2.5e-58 229.9 250 48.4
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 3.8e-54 216.1 225 52.9
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 6.4e-54 215.3 188 58.5
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.9e-50 203.8 342 39.8
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 6.2e-49 198.7 178 60.1
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.0e-47 193.7 170 59.4
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 1.4e-45 187.6 244 45.9
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 3.2e-45 186.4 148 58.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 3.7e-41 172.9 137 65.0
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 1.1e-32 144.8 110 65.5
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 1.1e-29 134.8 247 36.8
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 3.3e-26 123.2 137 49.6
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-25 121.3 117 56.4
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.3e-25 121.3 117 56.4
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 4.5e-23 112.8 122 45.9
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 5.0e-22 109.4 128 49.2
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 2.1e-20 104.0 199 29.1
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.8e-19 100.9 207 35.7
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 2.0e-15 87.4 79 58.2
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 2.0e-15 87.4 155 38.1
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.1e-12 75.9 79 57.0
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 7.9e-12 75.5 97 45.4


User provided reference genes

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