Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.5e-61 239.2 112 100.0
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 3.0e-41 171.8 117 77.8
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 2.7e-26 122.1 115 62.6
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 7.0e-14 80.9 105 44.8
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.6e-13 79.7 119 42.9
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.6e-13 79.7 114 41.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 2.7e-13 79.0 114 43.0
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 3.5e-13 78.6 116 41.4
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 7.7e-13 77.4 119 42.0
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 7.7e-13 77.4 124 37.9
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.9e-12 75.5 126 38.1
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.8e-12 75.1 126 38.1
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 5.0e-12 74.7 128 38.3
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.0e-12 74.7 126 38.1
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 6.5e-12 74.3 123 40.7
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 6.5e-12 74.3 117 40.2
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.5e-11 73.2 128 38.3
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 7.2e-11 70.9 110 42.7
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 7.2e-11 70.9 110 42.7
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 7.2e-11 70.9 105 41.9
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 9.4e-11 70.5 101 47.5
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.2e-10 70.1 114 40.4
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 1.2e-10 70.1 124 42.7
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.2e-10 70.1 124 36.3
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 1.2e-10 70.1 121 40.5
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.6e-10 69.7 105 41.9
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 4.7e-10 68.2 103 38.8
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 6.1e-10 67.8 104 40.4
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 8.0e-10 67.4 117 38.5
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.0e-09 67.0 110 41.8
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.0e-09 67.0 116 40.5
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.4e-09 66.6 119 41.2
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.4e-09 66.6 108 39.8
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.4e-09 66.6 134 38.1
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.3e-09 65.9 116 37.1
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.3e-09 65.9 127 37.8
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.3e-09 65.9 118 40.7
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 3.0e-09 65.5 107 40.2
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 4.0e-09 65.1 131 35.9
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 5.2e-09 64.7 119 40.3
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 5.2e-09 64.7 112 42.9
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 5.2e-09 64.7 108 41.7
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.8e-09 64.3 113 42.5
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 8.8e-09 63.9 131 35.1
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 8.8e-09 63.9 101 41.6
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 2.0e-08 62.8 106 35.8
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 2.0e-08 62.8 119 37.8
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.6e-08 62.4 112 35.7
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 2.6e-08 62.4 113 39.8
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 3.4e-08 62.0 101 41.6
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.4e-08 62.0 112 35.7
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 5.7e-08 61.2 108 38.9
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 5.7e-08 61.2 107 37.4
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 7.5e-08 60.8 110 39.1
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 9.8e-08 60.5 106 36.8
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 9.8e-08 60.5 106 35.8
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.3e-07 60.1 115 39.1
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 1.3e-07 60.1 99 36.4
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 1.7e-07 59.7 132 36.4
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 1.7e-07 59.7 132 36.4
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 1.7e-07 59.7 132 36.4
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 1.7e-07 59.7 109 37.6
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 1.7e-07 59.7 109 37.6
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.7e-07 59.7 105 36.2
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 4.8e-07 58.2 102 38.2
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 6.3e-07 57.8 109 38.5
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 6.3e-07 57.8 110 36.4
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 8.3e-07 57.4 134 35.8
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 8.3e-07 57.4 134 35.8
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 8.3e-07 57.4 110 39.1
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.8e-06 56.2 99 40.4
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 1.8e-06 56.2 111 39.6
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 2.4e-06 55.8 119 38.7
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 2.4e-06 55.8 100 38.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 2.4e-06 55.8 104 42.3
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 2.4e-06 55.8 113 38.1
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 3.1e-06 55.5 103 40.8
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 3.1e-06 55.5 102 39.2
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 4.1e-06 55.1 88 40.9
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.1e-06 55.1 115 37.4
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 5.4e-06 54.7 106 39.6
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 7.0e-06 54.3 131 36.6
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 7.0e-06 54.3 100 38.0


User provided reference genes

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