Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 4.8e-85 317.8 157 100.0
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.0e-83 312.4 157 98.1
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.2e-80 303.1 157 94.9
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 3.5e-64 248.4 157 79.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.3e-63 246.5 157 77.1
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.2e-49 197.6 157 60.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 9.4e-49 197.2 157 61.8
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.5e-46 189.9 155 58.7
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 5.7e-46 188.0 163 60.1
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 3.7e-45 185.3 164 57.9
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 4.8e-45 184.9 158 57.6
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 4.8e-45 184.9 160 55.6
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.4e-44 182.6 161 57.1
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.1e-44 181.8 171 53.8
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.0e-43 179.5 155 55.5
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 3.4e-43 178.7 157 56.1
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 4.5e-43 178.3 152 55.3
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 5.9e-43 177.9 155 54.8
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 7.7e-43 177.6 157 58.0
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.0e-42 177.2 157 56.1
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.0e-42 177.2 155 54.8
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.0e-42 177.2 165 53.3
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.7e-42 176.4 159 55.3
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 8.5e-42 174.1 157 53.5
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.4e-41 173.3 166 54.2
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 3.2e-41 172.2 162 57.4
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 4.2e-41 171.8 168 53.0
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.1e-40 169.5 153 52.9
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.7e-40 169.1 165 51.5
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 4.7e-40 168.3 197 48.2
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.4e-39 166.8 151 53.6
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.4e-39 166.8 159 54.7
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 3.0e-39 165.6 157 54.1
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 5.2e-39 164.9 159 52.2
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 5.2e-39 164.9 159 52.2
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.1e-38 163.7 160 53.1
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.0e-38 162.9 159 54.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 4.4e-38 161.8 160 49.4
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.3e-37 160.2 159 50.9
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.7e-37 159.8 160 52.5
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.2e-37 157.5 157 50.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.4e-36 156.8 159 50.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.4e-36 156.8 162 51.2
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.4e-36 156.0 160 48.1
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 3.1e-36 155.6 163 49.7
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 3.1e-36 155.6 160 50.6
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 3.1e-36 155.6 160 50.6
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 4.1e-36 155.2 158 50.6
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 4.1e-36 155.2 160 50.0
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 5.3e-36 154.8 163 50.9
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 9.1e-36 154.1 163 49.7
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 9.1e-36 154.1 167 50.3
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.2e-35 153.7 162 51.9
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.2e-35 153.7 157 52.2
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.6e-35 153.3 159 50.9
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-35 152.9 170 51.2
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.0e-35 152.9 165 50.9
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.6e-35 152.5 163 49.1
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.6e-35 152.5 158 49.4
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.5e-35 152.1 159 49.7
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-35 152.1 153 46.4
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.9e-35 151.4 163 49.1
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 5.9e-35 151.4 160 46.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.0e-34 150.6 163 48.5
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.0e-34 150.6 160 51.9
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.0e-34 150.6 161 49.1
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.3e-34 150.2 158 49.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.9e-34 149.1 158 48.1
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.9e-34 149.1 153 48.4
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 5.0e-34 148.3 163 47.9
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 5.0e-34 148.3 153 48.4
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 5.0e-34 148.3 159 46.5
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 5.0e-34 148.3 162 48.8
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.1e-33 147.1 160 46.9
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 7.2e-33 144.4 155 47.1
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.2e-32 143.7 153 49.7
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.2e-32 143.7 157 51.6
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.1e-32 142.9 161 49.7
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.7e-32 142.5 163 47.9
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.7e-32 142.5 164 45.7
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.7e-32 142.5 157 49.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 6.1e-32 141.4 169 47.9
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.0e-31 140.6 153 46.4
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.4e-31 140.2 153 46.4
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-31 139.8 153 47.1
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.3e-31 139.4 220 37.7
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 6.7e-31 137.9 155 48.4
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 2.0e-30 136.3 160 50.0
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.6e-30 136.0 157 47.1
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 2.6e-30 136.0 156 46.2
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 3.3e-30 135.6 170 47.6
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 9.7e-30 134.0 198 39.4
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.7e-29 133.3 160 42.5
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 2.2e-29 132.9 154 47.4
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.8e-29 132.5 161 47.8
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.8e-29 132.5 153 44.4
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.7e-29 132.1 166 46.4
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.4e-28 130.2 168 42.9
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.8e-28 129.8 137 47.4
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-28 129.8 157 44.6
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.8e-28 129.8 157 44.6
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.4e-28 129.4 150 48.7
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 2.4e-28 129.4 195 40.0
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.2e-27 127.1 267 31.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.6e-27 126.7 196 39.3
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 4.5e-27 125.2 240 32.9
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.7e-26 123.2 155 45.2
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.9e-26 122.5 158 42.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 5.0e-26 121.7 160 46.2
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 8.5e-26 120.9 165 42.4
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.1e-25 120.6 151 46.4
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 1.9e-25 119.8 157 44.6
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.2e-25 119.0 157 47.1
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 9.4e-25 117.5 156 45.5
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 9.4e-25 117.5 111 51.4
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.6e-24 116.7 156 44.9
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.6e-24 116.7 217 36.4
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 2.7e-24 115.9 156 44.9
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 6.1e-24 114.8 150 48.7
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 6.1e-24 114.8 159 40.3
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 6.1e-24 114.8 156 45.5
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 8.0e-24 114.4 163 43.6
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 8.0e-24 114.4 155 46.5
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.0e-23 114.0 111 55.0
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.8e-23 113.2 158 43.0
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.0e-23 112.5 147 48.3
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 6.8e-23 111.3 153 47.7
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.2e-22 110.5 155 43.9
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.2e-22 110.5 155 43.9
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.2e-22 110.5 175 38.3
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.5e-22 110.2 144 43.8
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 2.6e-22 109.4 146 46.6
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.4e-22 108.6 153 46.4
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.4e-22 108.6 153 46.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 5.7e-22 108.2 170 36.5
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 7.0e-20 101.3 155 40.0
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.2e-19 100.5 122 50.0
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.6e-19 100.1 81 53.1
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 3.5e-19 99.0 158 39.2
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 5.9e-19 98.2 163 39.3
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.0e-18 97.4 159 40.9
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 4.2e-17 92.0 99 49.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.1e-16 89.7 81 56.8
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.6e-16 89.0 75 48.0
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 5.2e-15 85.1 76 51.3
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 6.8e-15 84.7 146 39.0
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 1.2e-14 84.0 77 46.8
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 9.8e-14 80.9 80 51.2
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.7e-13 80.1 73 50.7
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 8.3e-13 77.8 87 49.4
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.4e-12 76.3 123 39.8
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.7e-10 70.1 75 50.7
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 2.3e-10 69.7 88 45.5
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.9e-10 69.3 140 35.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.6e-10 68.2 78 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 3.3e-09 65.9 105 35.2
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 5.6e-09 65.1 77 37.7
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 3.6e-08 62.4 44 59.1


User provided reference genes

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