Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 2.4e-61 238.8 132 100.0
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 7.9e-57 223.8 127 97.6
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 7.9e-57 223.8 127 97.6
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 9.0e-45 183.7 139 77.7
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 1.1e-34 150.2 141 62.4
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.9e-34 149.4 136 61.0
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 4.2e-34 148.3 128 62.5
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 4.2e-34 148.3 133 64.7
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 5.5e-34 147.9 126 66.7
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.2e-33 146.7 119 67.2
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 2.7e-33 145.6 119 67.2
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 2.7e-33 145.6 119 67.2
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 7.9e-33 144.1 126 64.3
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 7.9e-33 144.1 123 66.7
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.0e-32 143.7 120 68.3
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 1.3e-32 143.3 123 66.7
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 1.3e-32 143.3 132 64.4
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 2.3e-32 142.5 119 66.4
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 3.0e-32 142.1 124 64.5
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 6.7e-32 141.0 135 62.2
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 6.7e-32 141.0 125 60.0
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 1.1e-31 140.2 121 64.5
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 1.1e-31 140.2 130 61.5
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 4.3e-31 138.3 135 58.5
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 4.3e-31 138.3 125 59.2
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 4.3e-31 138.3 131 60.3
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 9.7e-31 137.1 120 64.2
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 1.3e-30 136.7 122 61.5
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.3e-30 136.7 135 58.5
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 3.7e-30 135.2 126 58.7
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 3.7e-30 135.2 140 60.0
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 3.7e-30 135.2 120 62.5
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 4.8e-30 134.8 131 60.3
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 4.8e-30 134.8 110 64.5
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 6.3e-30 134.4 141 59.6
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 8.2e-30 134.0 120 62.5
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 1.1e-29 133.7 129 62.8
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.4e-29 133.3 141 59.6
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 1.8e-29 132.9 120 62.5
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 3.1e-29 132.1 111 64.9
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 4.1e-29 131.7 109 67.0
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 5.3e-29 131.3 114 64.9
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 6.9e-29 131.0 124 58.1
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 1.2e-28 130.2 124 58.1
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 1.2e-28 130.2 93 81.7
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 1.2e-28 130.2 103 68.0
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.0e-28 129.4 121 63.6
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 2.0e-28 129.4 124 56.5
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 2.6e-28 129.0 122 60.7
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 3.4e-28 128.6 113 68.1
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 3.4e-28 128.6 113 68.1
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 7.7e-28 127.5 113 67.3
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 7.7e-28 127.5 113 67.3
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 7.7e-28 127.5 113 67.3
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 1.0e-27 127.1 115 66.1
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 1.0e-27 127.1 125 57.6
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 1.0e-27 127.1 114 64.0
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 1.3e-27 126.7 111 61.3
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 1.3e-27 126.7 109 64.2
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 1.7e-27 126.3 112 64.3
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.7e-27 126.3 157 49.7
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 3.8e-27 125.2 113 65.5
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 5.0e-27 124.8 125 56.8
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 6.5e-27 124.4 119 59.7
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 8.5e-27 124.0 115 64.3
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 8.5e-27 124.0 124 60.5
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.9e-26 122.9 115 64.3
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 5.5e-26 121.3 119 57.1
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.2e-25 120.2 115 62.6
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 1.2e-25 120.2 125 58.4
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.2e-25 120.2 112 58.9
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.6e-25 119.8 156 48.1
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 2.1e-25 119.4 109 62.4
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 2.7e-25 119.0 117 57.3
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 2.7e-25 119.0 115 62.6
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.6e-25 118.6 112 58.0
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 4.7e-25 118.2 115 62.6
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 4.7e-25 118.2 172 45.9
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 6.1e-25 117.9 114 57.0
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 6.1e-25 117.9 119 57.1
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 7.4e-23 110.9 148 46.6
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 7.4e-23 110.9 119 51.3
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 1.3e-22 110.2 122 54.1
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 1.7e-22 109.8 93 63.4
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 8.2e-22 107.5 110 53.6
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 3.1e-21 105.5 90 62.2
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.4e-20 102.1 103 54.4
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 4.5e-20 101.7 123 48.8
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 2.2e-19 99.4 96 58.3
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 5.0e-19 98.2 98 58.2
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 1.9e-18 96.3 78 64.1
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 9.4e-18 94.0 85 56.5
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 2.1e-17 92.8 81 60.5
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 2.7e-17 92.4 70 68.6
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 3.6e-17 92.0 80 62.5
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 3.6e-17 92.0 77 63.6
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 2.3e-16 89.4 106 50.0
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 1.1e-15 87.0 77 59.7
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.5e-15 86.7 124 43.5
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 2.6e-15 85.9 71 62.0
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 4.4e-15 85.1 77 55.8
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 2.2e-14 82.8 116 53.4
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 2.2e-14 82.8 116 53.4
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 1.4e-13 80.1 82 62.2
Sed0003750 Sechium edule HOM05D006869 ORTHO05D008641 1.2e-12 77.0 132 43.9
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 2.6e-12 75.9 57 70.2
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 8.0e-09 64.3 68 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 1.4e-08 63.5 117 36.8
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 3.0e-08 62.4 77 48.1
Mapoly0009s0146 Marchantia polymorpha HOM05D006869 ORTHO05D008641 4.0e-08 62.0 105 37.1
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 6.7e-08 61.2 45 62.2
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 8.8e-08 60.8 49 61.2
Zm00001eb390630 Zea mays HOM05D006869 ORTHO05D008641 4.4e-07 58.5 49 67.3


User provided reference genes

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