Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 9.6e-26 119.4 61 100.0
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 2.4e-24 114.8 61 93.4
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 2.2e-22 108.2 62 93.5
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 2.3e-19 98.2 54 90.7
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 2.8e-17 91.3 57 78.9
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 3.7e-17 90.9 58 79.3
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 4.8e-17 90.5 58 79.3
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 4.8e-17 90.5 61 73.8
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.1e-16 89.4 55 78.2
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 3.1e-16 87.8 61 73.8
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 4.1e-16 87.4 54 79.6
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 6.9e-16 86.7 54 77.8
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 6.9e-16 86.7 51 82.4
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 9.0e-16 86.3 53 79.2
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 9.0e-16 86.3 55 78.2
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 9.0e-16 86.3 57 73.7
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 2.0e-15 85.1 59 71.2
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 5.9e-15 83.6 61 72.1
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 5.9e-15 83.6 51 78.4
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 7.7e-15 83.2 53 75.5
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 7.7e-15 83.2 55 72.7
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 7.7e-15 83.2 57 71.9
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 1.3e-14 82.4 61 70.5
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.3e-14 82.4 57 70.2
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 1.3e-14 82.4 46 80.4
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 1.3e-14 82.4 57 71.9
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.3e-14 82.4 57 73.7
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 2.2e-14 81.6 53 71.7
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 3.8e-14 80.9 54 72.2
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 5.0e-14 80.5 51 76.5
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 6.5e-14 80.1 58 70.7
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 6.5e-14 80.1 58 70.7
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 6.5e-14 80.1 58 70.7
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 6.5e-14 80.1 53 73.6
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.5e-14 80.1 54 72.2
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 6.5e-14 80.1 58 65.5
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 8.5e-14 79.7 61 65.6
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 8.5e-14 79.7 47 76.6
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 8.5e-14 79.7 48 75.0
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.9e-13 78.6 48 72.9
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 1.9e-13 78.6 47 78.7
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 1.9e-13 78.6 58 70.7
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.5e-13 78.2 55 69.1
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 2.5e-13 78.2 53 71.7
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.2e-13 77.8 55 69.1
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 3.2e-13 77.8 55 69.1
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 4.2e-13 77.4 47 74.5
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 4.2e-13 77.4 47 76.6
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 5.5e-13 77.0 54 68.5
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 5.5e-13 77.0 55 70.9
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 5.5e-13 77.0 46 78.3
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 5.5e-13 77.0 46 78.3
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 7.2e-13 76.6 41 90.2
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 7.2e-13 76.6 46 78.3
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 7.2e-13 76.6 59 66.1
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 9.4e-13 76.3 57 64.9
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 9.4e-13 76.3 57 64.9
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 1.2e-12 75.9 49 75.5
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 1.2e-12 75.9 59 66.1
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 1.2e-12 75.9 52 71.2
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.6e-12 75.5 52 69.2
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.6e-12 75.5 52 69.2
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 1.6e-12 75.5 52 71.2
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.6e-12 75.5 54 68.5
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 1.6e-12 75.5 47 74.5
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 2.1e-12 75.1 47 72.3
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 2.7e-12 74.7 47 72.3
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 3.6e-12 74.3 61 63.9
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 3.6e-12 74.3 61 63.9
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 3.6e-12 74.3 58 63.8
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.1e-12 73.6 55 65.5
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 6.1e-12 73.6 84 47.6
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 7.9e-12 73.2 53 66.0
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 7.9e-12 73.2 53 66.0
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 1.0e-11 72.8 47 72.3
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 1.0e-11 72.8 57 61.4
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.0e-11 72.8 58 63.8
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.4e-11 72.4 47 70.2
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 3.0e-11 71.2 55 69.1
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 1.5e-10 68.9 56 60.7
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 4.4e-10 67.4 52 67.3
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 6.3e-09 63.5 36 80.6
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 2.4e-08 61.6 86 43.0
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 3.1e-08 61.2 56 58.9
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 1.2e-07 59.3 37 73.0
Pp3c7_6680 Physcomitrium patens HOM05D052415 ORTHO05D048764 2.9e-06 54.7 46 50.0
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 3.8e-06 54.3 35 71.4


User provided reference genes

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