Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 4.3e-66 254.6 136 100.0
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 9.3e-53 210.3 124 91.1
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 5.1e-51 204.5 124 87.9
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 3.3e-50 201.8 124 87.1
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 1.1e-48 196.8 124 84.7
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 4.2e-45 184.9 125 76.0
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 7.1e-45 184.1 125 76.0
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 1.6e-44 183.0 125 74.4
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 1.6e-44 183.0 123 78.0
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 4.6e-44 181.4 125 76.0
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 1.0e-43 180.3 125 75.2
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 1.0e-43 180.3 125 74.4
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 1.8e-43 179.5 125 73.6
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 1.8e-43 179.5 125 73.6
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 2.3e-43 179.1 125 73.6
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 3.0e-43 178.7 125 74.4
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 3.0e-43 178.7 125 73.6
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 5.1e-43 177.9 125 72.0
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 1.1e-42 176.8 125 73.6
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 1.9e-42 176.0 125 72.8
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.9e-42 176.0 125 72.0
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 2.5e-42 175.6 125 71.2
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 2.5e-42 175.6 125 70.4
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 3.3e-42 175.3 125 72.0
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 3.3e-42 175.3 125 72.8
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 4.3e-42 174.9 125 72.0
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 5.6e-42 174.5 125 72.0
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 5.6e-42 174.5 125 71.2
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 5.6e-42 174.5 125 71.2
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 7.4e-42 174.1 125 70.4
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 9.6e-42 173.7 125 70.4
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 1.3e-41 173.3 125 68.8
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.6e-41 172.9 125 70.4
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 1.6e-41 172.9 125 70.4
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 2.1e-41 172.6 125 69.6
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.1e-41 172.6 125 69.6
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 4.8e-41 171.4 125 70.4
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 6.2e-41 171.0 125 70.4
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 8.1e-41 170.6 125 71.2
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 1.8e-40 169.5 125 71.2
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 3.1e-40 168.7 125 69.6
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 4.0e-40 168.3 121 71.1
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 6.9e-40 167.5 125 68.8
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 9.0e-40 167.2 125 70.4
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.6e-39 165.6 125 69.6
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.6e-39 165.6 125 69.6
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 4.5e-39 164.9 144 62.5
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 5.8e-39 164.5 125 66.4
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 1.3e-38 163.3 125 68.0
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 1.3e-38 163.3 125 65.6
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.7e-38 162.9 125 65.6
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 1.7e-38 162.9 125 65.6
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 2.9e-38 162.2 125 68.0
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 2.9e-38 162.2 125 65.6
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 3.8e-38 161.8 125 66.4
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 4.9e-38 161.4 124 67.7
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 4.9e-38 161.4 125 66.4
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 6.4e-38 161.0 125 65.6
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 6.4e-38 161.0 125 65.6
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 6.4e-38 161.0 124 68.5
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 8.4e-38 160.6 125 64.8
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 1.1e-37 160.2 125 66.4
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 1.9e-37 159.5 121 68.6
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 2.4e-37 159.1 125 64.8
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 3.2e-37 158.7 187 52.4
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 3.2e-37 158.7 125 67.2
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 3.2e-37 158.7 125 65.6
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 4.2e-37 158.3 125 65.6
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 5.5e-37 157.9 125 64.8
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 5.5e-37 157.9 125 64.8
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 5.5e-37 157.9 125 63.2
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 5.5e-37 157.9 124 66.1
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 9.3e-37 157.1 114 70.2
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 1.2e-36 156.8 123 66.7
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 2.7e-36 155.6 111 70.3
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 4.6e-36 154.8 147 59.9
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 6.0e-36 154.5 125 63.2
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.0e-35 153.7 125 61.6
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.8e-35 152.9 125 60.0
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 2.3e-35 152.5 113 68.1
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 3.0e-35 152.1 125 60.0
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 6.7e-35 151.0 136 60.3
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 8.7e-35 150.6 124 63.7
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.5e-34 149.8 149 58.4
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 1.9e-34 149.4 124 58.9
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 1.9e-34 149.4 124 60.5
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 1.9e-34 149.4 124 61.3
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 1.9e-34 149.4 124 62.1
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 2.5e-34 149.1 125 60.8
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 5.6e-34 147.9 125 60.8
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 9.6e-34 147.1 125 60.0
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 1.6e-33 146.4 125 57.6
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 2.1e-33 146.0 125 57.6
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 2.1e-33 146.0 125 57.6
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 2.1e-33 146.0 125 57.6
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 2.1e-33 146.0 125 58.4
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 2.8e-33 145.6 125 56.8
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 3.7e-33 145.2 125 57.6
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 1.1e-32 143.7 114 64.9
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 1.8e-32 142.9 125 56.8
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 2.4e-32 142.5 128 58.6
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 1.5e-31 139.8 125 56.8
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 2.0e-31 139.4 125 56.8
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 2.6e-31 139.0 125 57.6
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 4.5e-31 138.3 124 58.9
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 7.6e-31 137.5 108 65.7
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 1.0e-30 137.1 116 61.2
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.7e-30 136.3 123 59.3
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 2.5e-29 132.5 125 55.2
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 2.5e-29 132.5 116 59.5
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 9.3e-29 130.6 125 52.8
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 8.7e-27 124.0 113 58.4
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 4.3e-26 121.7 87 71.3
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 9.7e-26 120.6 283 33.6
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 1.3e-25 120.2 107 57.0
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 2.2e-22 109.4 117 56.4
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 4.2e-21 105.1 112 50.9
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 4.6e-20 101.7 72 72.2
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 2.4e-16 89.4 64 68.8
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 3.1e-16 89.0 86 55.8
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.6e-12 76.6 123 40.7
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.6e-12 76.6 123 40.7
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.3e-11 72.8 83 50.6
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 8.8e-11 70.9 49 69.4
MBI15_g37973_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 6.3e-09 64.7 46 65.2


User provided reference genes

Program Settings