Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 2.6e-159 565.5 311 100.0
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 5.1e-131 471.5 312 87.5
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 1.1e-101 374.0 290 73.8
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 1.8e-88 330.1 313 59.1
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 2.5e-85 319.7 301 60.1
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 9.4e-85 317.8 316 57.3
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 3.0e-83 312.8 302 59.3
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 4.0e-83 312.4 302 59.3
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 2.0e-82 310.1 293 60.1
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 2.8e-81 306.2 314 58.3
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 3.1e-80 302.8 310 56.5
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 4.1e-80 302.4 299 57.2
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 5.3e-80 302.0 309 55.3
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 1.2e-79 300.8 307 56.0
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 3.5e-79 299.3 314 55.1
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 7.7e-79 298.1 293 58.7
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 2.2e-78 296.6 307 55.4
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 2.9e-78 296.2 299 56.2
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 1.1e-77 294.3 309 54.0
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 1.1e-77 294.3 311 56.3
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.9e-77 293.5 299 55.9
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.6e-76 290.4 301 56.8
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 2.1e-76 290.0 315 53.0
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 2.1e-76 290.0 194 77.3
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 2.7e-76 289.7 311 53.7
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 6.1e-76 288.5 289 58.8
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 8.8e-75 284.6 312 53.5
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 5.7e-74 282.0 298 54.4
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 9.8e-74 281.2 297 56.9
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 3.7e-73 279.3 303 56.4
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 6.3e-73 278.5 291 56.7
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 3.1e-72 276.2 286 57.3
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 3.1e-72 276.2 292 55.8
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 3.1e-72 276.2 289 56.7
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 7.0e-72 275.0 298 54.4
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 1.6e-71 273.9 294 55.1
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 1.0e-70 271.2 310 53.9
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 1.3e-70 270.8 304 53.9
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 2.3e-70 270.0 315 52.1
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 2.5e-69 266.5 294 52.0
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 7.2e-69 265.0 290 56.9
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 7.2e-69 265.0 292 55.1
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 7.2e-69 265.0 301 56.5
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 1.0e-67 261.2 301 53.8
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 1.8e-67 260.4 305 53.4
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 2.3e-67 260.0 310 49.0
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 4.0e-67 259.2 312 51.0
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 6.8e-67 258.5 256 57.0
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 9.8e-66 254.6 316 50.6
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 3.5e-63 246.1 295 52.9
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 2.9e-62 243.0 294 51.0
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 3.3e-61 239.6 273 52.7
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 1.8e-59 233.8 307 50.5
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 2.3e-59 233.4 322 48.4
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 2.3e-59 233.4 322 48.4
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 6.8e-59 231.9 306 47.7
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 8.9e-59 231.5 306 48.7
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 1.2e-58 231.1 292 49.7
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 7.5e-58 228.4 294 51.0
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 2.9e-57 226.5 312 46.2
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 6.4e-57 225.3 314 46.8
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 3.2e-56 223.0 305 47.5
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 4.6e-55 219.2 317 45.7
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 3.0e-54 216.5 318 45.6
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 8.6e-54 214.9 318 45.6
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 8.6e-54 214.9 251 48.6
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 1.1e-53 214.5 263 51.3
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 1.5e-53 214.2 320 44.7
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 1.9e-53 213.8 288 46.5
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 2.5e-53 213.4 288 46.9
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 4.3e-53 212.6 304 45.7
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 1.2e-52 211.1 285 47.7
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 1.2e-52 211.1 239 53.6
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 3.6e-52 209.5 309 45.6
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 1.4e-51 207.6 293 47.8
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 1.8e-51 207.2 324 43.8
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 1.8e-51 207.2 272 48.9
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 4.0e-51 206.1 286 49.7
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 5.2e-51 205.7 273 48.0
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 6.8e-51 205.3 233 53.6
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 8.9e-51 204.9 259 49.8
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 1.7e-49 200.7 251 43.4
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 1.7e-49 200.7 292 44.5
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 1.7e-49 200.7 300 46.7
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 4.9e-49 199.1 311 45.3
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.4e-48 197.6 251 47.0
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 7.1e-48 195.3 312 41.3
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 1.6e-47 194.1 253 49.4
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 1.0e-46 191.4 282 46.5
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 5.2e-43 179.1 249 50.2
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 5.8e-42 175.6 255 43.9
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 2.2e-41 173.7 251 45.4
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 4.6e-39 166.0 227 46.7
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 6.0e-39 165.6 230 43.5
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 2.5e-37 160.2 255 43.5
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 3.3e-37 159.8 227 48.0
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 4.7e-36 156.0 262 39.7
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 5.2e-35 152.5 270 37.8
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 3.2e-32 143.3 204 41.2
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 4.2e-32 142.9 218 42.7
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 9.3e-32 141.7 214 40.2
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 1.6e-28 131.0 79 82.3
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 4.4e-26 122.9 188 39.4
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 1.6e-20 104.4 266 31.2
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 4.8e-20 102.8 315 32.4
Ah.07g199030 Amaranthus hybridus HOM05D006859 ORTHO05D007990 2.6e-18 97.1 84 61.9
VMungo1215G2895 Vigna mungo HOM05D006859 ORTHO05D007990 4.6e-15 86.3 234 31.2
Glyma.11G037400 Glycine max HOM05D006859 ORTHO05D007990 1.0e-14 85.1 273 29.7
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 7.4e-13 79.0 155 45.2
Phvul.002G001100 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 1.3e-12 78.2 241 32.4
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 2.8e-12 77.0 296 30.7
GSVIVG01007348001 Vitis vinifera HOM05D006859 ORTHO05D007990 2.8e-12 77.0 128 35.9
HPP92_014890 Vanilla planifolia HOM05D006859 ORTHO05D007990 7.6e-10 68.9 72 48.6
PSO717G0090 Papaver somniferum HOM05D006859 ORTHO05D007990 2.5e-08 63.9 245 30.2
CDE11G0285 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 1.6e-07 61.2 93 49.5
COL.COLO4_21682 Corchorus olitorius HOM05D006859 ORTHO05D007990 4.6e-07 59.7 153 28.8
Glyma.01G205500 Glycine max HOM05D006859 ORTHO05D007990 2.3e-06 57.4 229 29.7


User provided reference genes

Program Settings