Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003304.2 Cucumis melo HOM05D003389 ORTHO05D003917 7.5e-36 153.3 76 100.0
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 5.6e-15 84.0 55 74.5
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 5.6e-15 84.0 55 74.5
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 7.3e-15 83.6 55 72.7
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 8.9e-13 76.6 55 65.5
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 1.5e-12 75.9 56 64.3
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 2.0e-12 75.5 55 63.6
Cpa.g.sc29.33 Carica papaya HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 65.5
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 67.3
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 67.3
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 67.3
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 65.5
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 65.5
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 2.6e-12 75.1 55 65.5
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 3.4e-12 74.7 55 65.5
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 4.4e-12 74.3 55 63.6
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 4.4e-12 74.3 55 63.6
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 4.4e-12 74.3 55 63.6
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 5.8e-12 73.9 55 65.5
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 5.8e-12 73.9 55 65.5
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 5.8e-12 73.9 55 65.5
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 5.8e-12 73.9 55 61.8
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 5.8e-12 73.9 55 63.6
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 7.6e-12 73.6 55 63.6
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 7.6e-12 73.6 55 63.6
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 9.9e-12 73.2 55 61.8
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 9.9e-12 73.2 55 63.6
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 9.9e-12 73.2 55 61.8
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 1.3e-11 72.8 55 61.8
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 1.3e-11 72.8 55 63.6
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 1.7e-11 72.4 55 63.6
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 1.7e-11 72.4 55 63.6
MD04G1069900 Malus domestica HOM05D003389 ORTHO05D003917 1.7e-11 72.4 55 60.0
MD06G1071400 Malus domestica HOM05D003389 ORTHO05D003917 1.7e-11 72.4 55 60.0
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 1.7e-11 72.4 55 63.6
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 60.0
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 63.6
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 2.2e-11 72.0 55 60.0
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 2.9e-11 71.6 55 61.8
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 2.9e-11 71.6 55 61.8
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 2.9e-11 71.6 54 61.1
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 2.9e-11 71.6 55 61.8
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 3.8e-11 71.2 55 63.6
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 3.8e-11 71.2 55 61.8
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 3.8e-11 71.2 55 61.8
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 4.9e-11 70.9 55 60.0
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 4.9e-11 70.9 55 61.8
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 4.9e-11 70.9 55 61.8
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 4.9e-11 70.9 55 60.0
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 4.9e-11 70.9 55 63.6
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 6.4e-11 70.5 55 61.8
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 6.4e-11 70.5 55 63.6
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 8.4e-11 70.1 55 60.0
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 8.4e-11 70.1 55 60.0
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.4e-10 69.3 55 61.8
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.4e-10 69.3 55 60.0
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 1.4e-10 69.3 55 60.0
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 1.4e-10 69.3 55 60.0
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 1.4e-10 69.3 55 60.0
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 1.9e-10 68.9 57 63.2
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 1.9e-10 68.9 55 58.2
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 1.9e-10 68.9 43 76.7
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 2.4e-10 68.6 53 62.3
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 2.4e-10 68.6 53 62.3
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 3.2e-10 68.2 55 58.2
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.2e-10 68.2 55 58.2
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 3.2e-10 68.2 55 58.2
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 3.2e-10 68.2 55 60.0
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 3.2e-10 68.2 55 60.0
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 4.1e-10 67.8 55 58.2
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 4.1e-10 67.8 55 58.2
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 4.1e-10 67.8 55 58.2
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 4.1e-10 67.8 55 58.2
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 4.1e-10 67.8 55 58.2
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 4.1e-10 67.8 55 58.2
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 5.4e-10 67.4 55 58.2
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 5.4e-10 67.4 53 64.2
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 5.4e-10 67.4 53 62.3
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 7.1e-10 67.0 55 56.4
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 7.1e-10 67.0 55 56.4
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 7.1e-10 67.0 55 56.4
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 9.2e-10 66.6 55 58.2
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 9.2e-10 66.6 55 60.0
Glyma.04G257602 Glycine max HOM05D003389 ORTHO05D003917 1.6e-09 65.9 53 62.3
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 1.6e-09 65.9 55 56.4
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 2.1e-09 65.5 55 52.7
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 2.1e-09 65.5 55 56.4
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 2.7e-09 65.1 66 56.1
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 3.5e-09 64.7 55 58.2
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 3.5e-09 64.7 55 56.4
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 3.5e-09 64.7 55 52.7
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 4.6e-09 64.3 55 52.7
Glyma.03G264902 Glycine max HOM05D003389 ORTHO05D003917 4.6e-09 64.3 53 60.4
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 4.6e-09 64.3 55 54.5
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 6.0e-09 63.9 53 58.5
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 7.8e-09 63.5 43 69.8
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 7.8e-09 63.5 55 54.5
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 1.3e-08 62.8 55 54.5
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 1.3e-08 62.8 68 48.5
CDE12G0774 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 1.7e-08 62.4 55 54.5
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 2.3e-08 62.0 55 54.5
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 3.0e-08 61.6 53 64.2
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 3.9e-08 61.2 53 56.6
Rhsim11G0008100 Rhododendron simsii HOM05D003389 ORTHO05D003917 3.9e-08 61.2 62 58.1
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 3.9e-08 61.2 55 52.7
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 5.1e-08 60.8 41 73.2
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 5.1e-08 60.8 55 56.4
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 5.1e-08 60.8 56 57.1
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 5.1e-08 60.8 55 52.7
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 8.7e-08 60.1 55 54.5
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 1.1e-07 59.7 55 49.1
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 1.1e-07 59.7 55 49.1
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 1.1e-07 59.7 55 49.1
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 1.1e-07 59.7 55 49.1
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 1.1e-07 59.7 55 49.1
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 1.1e-07 59.7 55 49.1
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 1.5e-07 59.3 55 47.3
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 5.6e-07 57.4 35 80.0
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 5.6e-07 57.4 35 80.0
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 9.6e-07 56.6 39 74.4
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 9.6e-07 56.6 48 58.3
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 1.2e-06 56.2 42 66.7
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 2.1e-06 55.5 56 42.9
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 2.8e-06 55.1 48 62.5
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 3.6e-06 54.7 41 68.3


User provided reference genes

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