Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 7.4e-118 427.2 210 100.0
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 4.8e-101 371.3 204 90.7
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 2.7e-99 365.5 194 92.3
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 2.4e-92 342.4 193 85.0
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 9.5e-81 303.9 175 81.1
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 9.5e-81 303.9 194 74.7
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 2.1e-80 302.8 206 71.4
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.8e-80 302.4 200 74.0
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 3.1e-79 298.9 196 73.0
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 4.0e-79 298.5 200 72.5
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 5.2e-79 298.1 175 79.4
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 6.8e-79 297.7 175 80.0
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 4.4e-78 295.0 177 80.2
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 5.8e-78 294.7 180 78.3
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 7.5e-78 294.3 197 73.1
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 1.3e-77 293.5 203 71.4
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 1.3e-77 293.5 200 71.5
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 2.9e-77 292.4 191 71.7
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 8.3e-77 290.8 191 71.7
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 1.4e-76 290.0 192 71.9
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 2.4e-76 289.3 192 72.4
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 1.6e-75 286.6 192 71.4
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 2.1e-75 286.2 175 77.1
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 2.7e-75 285.8 195 70.3
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 2.7e-75 285.8 193 72.0
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 4.6e-75 285.0 191 71.7
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 4.6e-75 285.0 191 70.7
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 3.9e-74 282.0 181 74.6
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 8.6e-74 280.8 175 74.9
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 8.6e-74 280.8 201 67.7
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 1.1e-73 280.4 194 68.0
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 1.5e-73 280.0 175 76.0
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 1.9e-73 279.6 152 81.6
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 4.3e-73 278.5 178 74.2
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 4.3e-73 278.5 198 66.7
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 4.3e-73 278.5 191 66.0
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 5.6e-73 278.1 194 70.1
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 9.5e-73 277.3 194 67.0
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 1.2e-72 276.9 194 67.0
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 1.6e-72 276.6 175 74.3
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 2.1e-72 276.2 195 67.7
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 3.6e-72 275.4 175 71.4
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 4.7e-72 275.0 183 72.1
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 4.7e-72 275.0 194 67.5
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 6.2e-72 274.6 179 71.5
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 6.2e-72 274.6 185 71.9
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 6.2e-72 274.6 197 68.0
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 6.2e-72 274.6 175 73.1
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 8.1e-72 274.2 193 70.5
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 8.1e-72 274.2 196 69.4
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 1.1e-71 273.9 191 66.5
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 1.1e-71 273.9 196 64.8
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 1.4e-71 273.5 194 67.5
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 1.8e-71 273.1 193 66.8
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 3.1e-71 272.3 175 72.0
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 3.1e-71 272.3 191 64.9
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 4.0e-71 271.9 177 73.4
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 4.0e-71 271.9 191 64.4
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 5.2e-71 271.6 175 74.3
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 8.9e-71 270.8 175 72.6
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 8.9e-71 270.8 175 72.6
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 8.9e-71 270.8 175 69.1
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 1.2e-70 270.4 175 71.4
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 1.5e-70 270.0 185 69.7
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 1.5e-70 270.0 175 73.1
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 2.0e-70 269.6 176 72.7
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 2.6e-70 269.2 175 71.4
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 3.4e-70 268.9 175 73.1
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 3.4e-70 268.9 200 66.5
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 7.5e-70 267.7 195 66.7
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.3e-69 266.9 260 55.4
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 2.2e-69 266.2 191 67.5
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 4.9e-69 265.0 194 66.5
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 2.4e-68 262.7 205 63.4
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.5e-67 258.8 208 61.5
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 1.5e-65 253.4 177 69.5
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.5e-65 253.4 200 64.5
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 3.3e-65 252.3 194 68.0
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 3.1e-63 245.7 176 66.5
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 2.6e-62 242.7 179 65.4
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 6.4e-61 238.0 135 80.0
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 5.4e-60 235.0 178 61.2
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 6.0e-59 231.5 179 67.6
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 6.0e-59 231.5 201 55.7
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 9.6e-57 224.2 200 58.5
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 1.3e-56 223.8 195 57.4
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 2.1e-56 223.0 174 62.1
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 2.0e-54 216.5 231 51.1
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 3.8e-53 212.2 191 54.5
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 4.9e-53 211.8 136 72.1
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 3.2e-52 209.1 144 64.6
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 5.4e-52 208.4 138 73.2
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 2.1e-51 206.5 189 57.7
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 6.6e-50 201.4 175 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 1.9e-49 199.9 136 65.4
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 1.6e-48 196.8 197 55.8
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 3.6e-48 195.7 134 70.1
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 1.4e-47 193.7 260 46.5
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 2.2e-45 186.4 177 54.8
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 1.1e-36 157.5 210 44.3
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 4.2e-28 129.0 85 70.6
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 1.9e-25 120.2 95 65.3
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 4.3e-17 92.4 68 60.3
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 4.1e-07 59.3 120 30.0


User provided reference genes

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