Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 2.7e-135 485.3 242 100.0
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 4.0e-83 312.0 189 86.2
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 3.8e-73 278.9 189 79.4
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 2.5e-64 249.6 190 72.6
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 2.4e-51 206.5 191 59.7
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 2.9e-49 199.5 190 61.1
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 9.4e-48 194.5 191 57.1
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 2.1e-47 193.4 190 58.4
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 2.7e-47 193.0 193 57.0
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 3.6e-47 192.6 193 57.5
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 3.6e-47 192.6 192 56.2
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.0e-46 191.0 188 58.0
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 2.3e-46 189.9 190 58.4
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 2.0e-45 186.8 190 55.8
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 3.3e-45 186.0 190 55.8
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 3.3e-45 186.0 201 56.7
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 2.2e-44 183.3 157 63.1
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 8.2e-44 181.4 189 54.0
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 4.1e-43 179.1 139 66.2
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 6.9e-43 178.3 188 55.9
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 9.1e-43 177.9 190 54.7
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.5e-42 177.2 186 54.3
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 2.6e-42 176.4 193 53.4
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 2.6e-42 176.4 186 53.8
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 5.9e-42 175.3 190 57.9
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 7.7e-42 174.9 188 55.9
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 7.7e-42 174.9 188 55.9
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 7.7e-42 174.9 149 63.8
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 1.0e-41 174.5 147 63.9
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.7e-41 173.7 193 51.8
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.2e-41 173.3 188 52.1
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.9e-41 172.9 193 53.9
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 5.0e-41 172.2 146 63.7
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 6.5e-41 171.8 143 67.1
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 6.5e-41 171.8 190 56.8
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 6.5e-41 171.8 190 56.8
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 8.5e-41 171.4 192 54.2
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 8.5e-41 171.4 147 63.3
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 8.5e-41 171.4 193 52.8
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.1e-40 171.0 192 53.1
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.1e-40 171.0 140 67.9
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.4e-40 170.6 188 55.3
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 2.5e-40 169.9 192 53.6
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 4.2e-40 169.1 187 54.0
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 4.2e-40 169.1 138 64.5
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 5.5e-40 168.7 190 56.3
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 9.4e-40 167.9 130 66.9
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 1.2e-39 167.5 116 70.7
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 1.2e-39 167.5 199 51.8
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 2.1e-39 166.8 141 62.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 2.7e-39 166.4 190 51.6
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 2.7e-39 166.4 129 67.4
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 3.6e-39 166.0 189 52.9
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 4.7e-39 165.6 114 72.8
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 6.1e-39 165.2 190 52.1
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 7.9e-39 164.9 183 51.9
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 7.9e-39 164.9 148 60.8
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.0e-38 164.5 141 58.9
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 1.8e-38 163.7 186 52.2
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 2.3e-38 163.3 185 51.9
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 3.0e-38 162.9 125 68.0
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.9e-38 162.5 122 67.2
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 5.1e-38 162.2 144 59.7
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 6.7e-38 161.8 123 68.3
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 6.7e-38 161.8 121 66.9
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.1e-37 161.0 123 66.7
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 2.6e-37 159.8 116 68.1
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 2.6e-37 159.8 133 66.2
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 4.4e-37 159.1 191 49.2
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 5.7e-37 158.7 162 54.9
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 7.4e-37 158.3 191 50.3
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 9.7e-37 157.9 131 64.1
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.7e-36 157.1 140 60.7
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 2.2e-36 156.8 156 53.8
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 2.2e-36 156.8 191 49.7
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 3.7e-36 156.0 191 49.7
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 8.2e-36 154.8 197 50.8
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 8.2e-36 154.8 131 62.6
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 5.3e-35 152.1 139 59.7
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.2e-34 151.0 128 62.5
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.5e-34 149.4 133 60.2
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 5.9e-34 148.7 117 62.4
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.3e-33 147.5 117 60.7
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.2e-33 146.7 128 60.9
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 1.6e-31 140.6 108 63.9
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 3.6e-31 139.4 142 50.0
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 3.6e-31 139.4 125 60.8
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.0e-30 137.9 109 62.4
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.5e-29 134.0 96 69.8
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.0e-26 123.6 105 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.2e-25 120.2 138 47.8
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 5.5e-24 115.5 199 39.2
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 1.3e-20 104.4 61 80.3
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 2.8e-20 103.2 60 80.0
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 3.7e-20 102.8 109 47.7
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 6.3e-20 102.1 95 60.0
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 2.4e-19 100.1 61 75.4
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.1e-19 99.8 58 82.8
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.2e-18 97.8 58 81.0
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 5.9e-18 95.5 58 77.6
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.2e-15 87.8 117 47.0
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 6.8e-14 82.0 63 61.9
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 1.5e-13 80.9 64 65.6
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 7.5e-13 78.6 110 43.6
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 1.3e-12 77.8 64 64.1
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.2e-12 77.0 41 85.4
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 3.7e-12 76.3 73 58.9
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 1.8e-11 73.9 78 51.3
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 9.2e-11 71.6 160 31.2
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.6e-10 70.9 134 32.8
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 6.6e-09 65.5 133 31.6
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-08 63.9 122 33.6
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 9.5e-08 61.6 122 32.0
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.1e-07 60.5 135 31.9
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 2.8e-07 60.1 50 62.0
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.3e-06 57.0 135 32.6


User provided reference genes

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