Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 0.0e+00 1569.3 841 100.0
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 0.0e+00 1081.6 860 74.1
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 6.5e-306 1053.9 860 72.7
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 5.0e-282 974.5 861 67.7
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 2.7e-187 659.8 867 50.2
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 1.1e-185 654.4 846 50.9
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 3.3e-185 652.9 843 51.7
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 3.8e-181 639.4 838 50.8
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 5.5e-180 635.6 860 49.3
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 2.0e-177 627.1 874 48.7
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 4.4e-177 625.9 876 49.0
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 4.5e-174 615.9 868 48.6
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 3.2e-172 609.8 804 50.1
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 3.6e-171 606.3 887 48.0
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 6.1e-171 605.5 876 47.9
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 1.0e-170 604.7 866 47.3
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.4e-170 604.4 869 48.3
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 2.6e-169 600.1 884 46.3
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 4.4e-169 599.4 703 55.5
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 8.3e-168 595.1 872 47.6
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 5.4e-167 592.4 865 47.6
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 2.7e-166 590.1 878 46.8
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 5.9e-166 589.0 787 49.2
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 5.9e-166 589.0 864 46.3
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 1.7e-165 587.4 787 49.0
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.7e-165 587.4 867 47.8
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 2.5e-164 583.6 869 46.8
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.4e-162 577.8 818 49.0
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 1.3e-160 571.2 872 47.0
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 4.9e-160 569.3 820 48.0
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.2e-158 564.7 830 46.9
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.9e-156 557.4 878 44.4
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.9e-156 557.4 872 45.9
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 2.5e-156 557.0 868 44.0
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 3.3e-156 556.6 707 51.3
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 5.6e-156 555.8 872 43.8
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 6.1e-155 552.4 797 46.5
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 6.1e-155 552.4 797 46.5
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.5e-153 547.7 813 46.5
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 3.4e-153 546.6 784 46.2
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 5.8e-153 545.8 869 45.3
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 7.5e-153 545.4 877 44.7
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 1.3e-152 544.7 797 46.0
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 1.3e-152 544.7 797 46.0
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 1.7e-152 544.3 875 43.8
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 3.7e-152 543.1 881 44.0
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 6.4e-152 542.3 876 43.4
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.1e-151 541.6 881 43.0
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 7.0e-151 538.9 841 45.1
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 1.2e-150 538.1 866 45.7
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 2.7e-150 537.0 838 45.8
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 2.7e-150 537.0 835 44.7
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 4.6e-150 536.2 821 46.0
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.9e-148 530.8 844 45.1
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 5.6e-148 529.3 865 44.0
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 2.8e-147 526.9 826 44.9
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 4.7e-147 526.2 783 46.2
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 1.4e-146 524.6 854 44.1
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 1.4e-146 524.6 761 45.6
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 4.0e-146 523.1 826 44.8
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 5.2e-146 522.7 799 45.7
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.5e-145 521.2 873 42.4
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 7.5e-145 518.8 753 45.2
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.7e-144 517.7 871 42.5
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.4e-143 514.6 821 44.5
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.9e-143 514.2 856 43.2
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 9.2e-143 511.9 769 45.9
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 2.7e-142 510.4 843 44.7
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.0e-141 508.4 744 45.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 1.3e-141 508.1 790 45.3
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 7.3e-140 502.3 746 46.0
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 4.0e-138 496.5 850 43.2
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 5.2e-138 496.1 834 41.8
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.6e-134 484.6 772 44.2
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 1.6e-134 484.6 784 43.9
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 6.6e-133 479.2 825 42.3
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 2.1e-131 474.2 834 43.3
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 2.0e-129 467.6 808 42.5
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 1.7e-128 464.5 829 42.9
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.2e-128 464.2 768 40.5
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 4.9e-128 463.0 808 42.7
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.4e-127 461.5 871 39.5
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 1.2e-126 458.4 808 42.0
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.1e-116 425.2 830 40.7
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 1.3e-112 411.8 761 40.1
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.7e-112 411.4 798 38.6
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 7.6e-105 386.0 603 46.4
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 3.8e-96 357.1 808 34.5
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 9.4e-87 325.9 588 42.5
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 5.9e-81 306.6 530 43.8
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.0e-72 279.3 418 50.0
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 2.7e-70 271.2 640 30.8
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.0e-61 242.7 404 38.1
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 2.3e-61 241.5 239 52.3
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 5.3e-58 230.3 539 39.7
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.8e-56 224.2 801 31.6
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 4.8e-51 207.2 523 35.9
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.9e-48 198.0 793 29.0
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 9.8e-44 183.0 794 29.1
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 2.8e-43 181.4 263 43.7
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 2.8e-38 164.9 242 43.0
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 1.0e-32 146.4 315 30.2
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 4.1e-26 124.4 133 53.4
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-21 109.8 179 37.4
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 9.6e-15 86.7 344 28.2
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 1.2e-14 86.3 106 41.5
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.4e-13 82.8 74 50.0
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 2.1e-09 68.9 161 27.3
AagrBONN_evm.TU.Sc2ySwM_117.1329 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-07 61.2 190 21.6
AagrBONN_evm.TU.Sc2ySwM_368.2504 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-07 61.2 211 22.7
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 4.3e-07 61.2 212 23.6
AagrBONN_evm.TU.Sc2ySwM_117.3851 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.6e-07 60.8 208 24.0
GSVIVG01037332001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.3e-07 60.5 162 27.8
AagrBONN_evm.TU.Sc2ySwM_117.1325 Anthoceros agrestis HOM05D002716 ORTHO05D003324 1.3e-06 59.7 182 25.3
AagrBONN_evm.TU.Sc2ySwM_228.53 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 208 24.0
AagrBONN_evm.TU.Sc2ySwM_228.5501 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.7 337 22.3
EL10Ac5g12814 Beta vulgaris HOM05D000001 ORTHO05D011055 1.3e-06 59.7 161 29.2
vmacro20492 Vaccinium macrocarpon HOM05D000001 ORTHO05D010426 1.3e-06 59.7 172 23.8
AagrBONN_evm.TU.Sc2ySwM_344.1284 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 59.3 282 21.3
AagrBONN_evm.TU.Sc2ySwM_344.1806 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 59.3 210 23.3
AL4G33220 Arabidopsis lyrata HOM05D000001 ORTHO05D009988 1.6e-06 59.3 243 23.0
AagrBONN_evm.TU.Sc2ySwM_228.115 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 58.9 201 23.9
AagrBONN_evm.TU.Sc2ySwM_344.1566 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 58.5 213 20.7
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 2.8e-06 58.5 118 32.2
Cfa009438 Carpinus fangiana HOM05D000001 ORTHO05D010470 3.6e-06 58.2 149 28.2
Dinv31682 Davidia involucrata HOM05D000001 ORTHO05D000003 3.6e-06 58.2 182 24.7
AagrBONN_evm.TU.Sc2ySwM_368.40__41 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.8e-06 57.8 439 21.4
AagrBONN_evm.TU.Sc2ySwM_368.3181 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.2e-06 57.4 189 21.7
Carub.0004s1882 Capsella rubella HOM05D000001 ORTHO05D009988 6.2e-06 57.4 244 22.1
Haze_12489 Corylus avellana HOM05D000001 ORTHO05D010470 6.2e-06 57.4 149 28.2
AagrBONN_evm.TU.Sc2ySwM_340.630 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-06 57.0 370 19.7
AagrBONN_evm.TU.Sc2ySwM_344.1466__1467__1468 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-06 57.0 135 28.1
ECA246G2963 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.1e-06 57.0 190 25.8


User provided reference genes

Program Settings