Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.7e-111 406.0 204 100.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.9e-78 296.2 166 91.0
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.9e-76 287.3 171 87.1
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 2.7e-72 275.8 172 83.1
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 9.0e-60 234.2 172 73.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.9e-39 165.6 160 56.2
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 5.1e-39 165.2 178 53.9
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.3e-38 162.5 159 54.1
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.6e-37 160.2 159 53.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.4e-36 156.4 152 56.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.4e-36 156.4 155 55.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.4e-36 156.4 156 55.8
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 6.9e-36 154.8 160 53.1
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 2.0e-35 153.3 152 52.6
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.0e-35 153.3 155 53.5
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.6e-35 152.9 139 57.6
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.4e-35 152.5 139 60.4
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 5.9e-35 151.8 183 51.4
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.9e-35 151.8 148 55.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.3e-34 150.6 159 50.9
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.3e-34 150.6 142 57.7
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.7e-34 150.2 165 53.3
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.8e-34 149.1 123 63.4
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.0e-34 148.7 160 51.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.1e-33 147.5 156 55.1
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.1e-33 147.5 151 54.3
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.5e-33 146.4 167 48.5
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 3.2e-33 146.0 160 55.0
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.2e-33 145.6 177 52.0
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.2e-33 145.6 144 56.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 4.2e-33 145.6 161 52.2
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 7.2e-33 144.8 176 50.0
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 7.2e-33 144.8 161 48.4
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 7.2e-33 144.8 135 53.3
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.2e-33 144.8 154 50.6
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 9.4e-33 144.4 147 52.4
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.6e-32 143.7 145 54.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.7e-32 142.9 176 50.0
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.7e-32 142.9 148 52.0
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.6e-32 142.5 154 55.8
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 4.6e-32 142.1 134 56.7
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.8e-31 140.2 136 55.1
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.0e-31 139.4 139 59.0
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 5.1e-31 138.7 172 47.1
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 6.7e-31 138.3 208 44.7
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 6.7e-31 138.3 146 50.7
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.1e-30 137.5 148 52.7
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.1e-30 137.5 155 55.5
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.0e-30 136.7 144 50.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.6e-30 136.3 125 56.8
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.6e-30 136.3 125 56.0
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.3e-30 135.6 125 55.2
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 5.7e-30 135.2 140 54.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 7.4e-30 134.8 172 42.4
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 9.7e-30 134.4 153 54.9
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.3e-29 134.0 159 46.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.3e-29 134.0 169 46.7
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.7e-29 133.7 124 52.4
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.2e-29 133.3 146 52.7
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 2.8e-29 132.9 142 52.1
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.8e-29 132.9 161 50.9
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.7e-29 132.5 154 50.6
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-29 132.1 151 47.7
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-29 132.1 151 47.7
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.4e-28 130.6 141 51.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.4e-28 130.6 156 48.7
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.4e-28 130.6 146 47.9
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 4.1e-28 129.0 139 52.5
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.3e-28 128.6 154 47.4
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 6.9e-28 128.3 136 54.4
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 9.1e-28 127.9 156 47.4
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.5e-27 127.1 139 51.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.0e-27 126.7 147 50.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 2.6e-27 126.3 146 49.3
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 3.4e-27 125.9 163 46.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.5e-27 125.6 159 45.3
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.5e-27 125.6 153 47.1
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.5e-27 125.6 160 49.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.0e-26 124.4 150 50.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.3e-26 124.0 150 47.3
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.9e-26 122.9 111 57.7
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.0e-26 122.1 128 49.2
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.1e-25 120.9 172 43.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 1.1e-25 120.9 151 44.4
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.9e-25 120.2 150 44.7
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 7.2e-25 118.2 153 45.8
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.6e-24 117.1 161 44.7
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.7e-24 116.3 156 46.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 4.7e-24 115.5 120 50.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 3.9e-23 112.5 136 47.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.5e-22 110.5 152 46.7
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.6e-22 109.8 160 43.8
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 3.3e-22 109.4 124 51.6
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.7e-22 108.6 130 50.0
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 7.4e-22 108.2 159 42.8
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 3.1e-20 102.8 131 44.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 7.0e-20 101.7 106 49.1
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 9.1e-20 101.3 113 46.0
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 3.5e-19 99.4 122 42.6
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 4.5e-19 99.0 159 42.1
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 4.5e-19 99.0 159 42.1
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 4.5e-19 99.0 159 42.1
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.5e-17 92.0 103 47.6
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.1e-16 90.1 182 40.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 3.6e-16 89.4 147 41.5
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 8.0e-16 88.2 147 40.8
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-12 77.4 138 34.8
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 5.3e-12 75.5 144 34.0
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-11 73.9 78 51.3
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.7e-11 73.2 162 34.6
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.7e-11 73.2 153 35.9
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 4.5e-11 72.4 68 50.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 4.5e-11 72.4 68 50.0
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-10 71.2 151 33.8
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.0e-10 71.2 151 33.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 2.2e-10 70.1 68 48.5
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.2e-10 70.1 92 42.4
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 6.5e-10 68.6 102 38.2
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.1e-08 63.5 92 38.0
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.3e-07 60.1 150 30.7
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 3.0e-07 59.7 111 29.7
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.0e-06 57.0 93 36.6
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 9.8e-06 54.7 92 33.7


User provided reference genes

Program Settings