Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 5.7e-111 404.8 304 100.0
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.5e-106 389.4 303 98.0
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 2.1e-89 333.2 301 68.1
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 2.3e-83 313.2 303 62.7
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.8e-81 306.2 301 69.4
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 3.6e-81 305.8 299 62.9
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 4.7e-81 305.4 300 75.0
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 5.2e-80 302.0 277 64.6
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.2e-80 302.0 301 62.5
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.9e-80 301.2 299 61.5
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 8.9e-80 301.2 297 63.6
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.0e-79 300.1 299 61.2
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.6e-79 299.7 296 61.5
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.4e-79 299.3 295 60.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.4e-79 298.9 299 60.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 5.8e-79 298.5 286 62.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 9.9e-79 297.7 303 63.0
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.3e-78 297.4 297 60.6
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.7e-78 297.0 297 60.6
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 2.2e-78 296.6 297 60.6
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.2e-78 296.6 297 60.3
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 6.4e-78 295.0 305 74.4
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.4e-77 293.9 309 68.0
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.4e-77 293.9 304 79.3
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 1.9e-77 293.5 283 64.0
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 2.4e-77 293.1 299 59.2
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.2e-77 292.7 284 60.9
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.2e-77 292.7 282 61.3
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 4.1e-77 292.4 269 65.8
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 9.2e-77 291.2 296 59.5
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.6e-76 290.4 291 81.8
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.1e-76 290.0 295 59.3
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.5e-76 289.3 297 59.3
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 4.6e-76 288.9 304 58.6
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.6e-76 288.9 302 67.9
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 3.0e-75 286.2 289 59.5
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 3.0e-75 286.2 298 58.1
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 3.9e-75 285.8 302 62.9
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 6.6e-75 285.0 293 59.7
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 6.6e-75 285.0 299 62.5
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.5e-74 283.9 293 65.2
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.5e-74 283.9 276 65.9
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.5e-74 283.9 302 57.9
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 2.5e-74 283.1 291 80.4
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 3.3e-74 282.7 300 57.7
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 4.3e-74 282.3 301 57.1
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 7.3e-74 281.6 286 77.6
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.6e-73 280.4 312 57.1
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.6e-73 280.4 298 78.2
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.1e-73 280.0 206 76.2
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 2.8e-73 279.6 287 59.9
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.6e-73 279.3 300 59.0
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 3.6e-73 279.3 304 57.6
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 4.7e-73 278.9 301 56.1
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 6.2e-73 278.5 290 58.3
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 8.1e-73 278.1 284 60.2
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 8.1e-73 278.1 298 56.7
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 2.4e-72 276.6 296 57.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 4.0e-72 275.8 205 74.1
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 5.2e-72 275.4 300 62.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 2.0e-71 273.5 294 58.8
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.0e-71 273.5 302 57.0
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.0e-71 273.5 302 57.0
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.0e-71 273.5 305 55.7
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.6e-71 273.1 247 66.0
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 3.4e-71 272.7 296 58.8
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 3.4e-71 272.7 302 56.0
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 5.8e-71 271.9 279 59.5
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.7e-70 270.4 295 56.9
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.7e-70 270.4 302 57.0
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.7e-70 270.4 302 55.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 8.4e-70 268.1 277 64.6
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.2e-68 264.2 292 63.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 2.7e-68 263.1 294 54.4
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 3.5e-68 262.7 300 61.3
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.3e-67 260.8 299 54.5
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.3e-67 260.8 299 54.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.3e-67 260.8 304 74.7
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 3.0e-67 259.6 289 78.2
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 3.9e-67 259.2 192 74.0
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 3.9e-67 259.2 306 57.8
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 6.6e-67 258.5 299 55.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 8.7e-67 258.1 290 55.5
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 5.6e-66 255.4 282 57.8
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 7.3e-66 255.0 307 55.7
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 7.3e-66 255.0 301 73.4
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.4e-64 250.0 286 54.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 4.0e-64 249.2 278 77.7
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 5.3e-64 248.8 277 60.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 6.9e-64 248.4 258 58.5
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 9.0e-64 248.1 296 52.4
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 9.0e-64 248.1 204 68.6
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.9e-62 243.0 269 55.8
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.7e-60 236.5 281 50.5
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 7.9e-60 235.0 206 65.5
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 7.9e-60 235.0 292 50.7
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.5e-58 230.7 306 48.4
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 7.3e-58 228.4 300 71.7
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 4.9e-54 215.7 288 67.4
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 2.1e-52 210.3 277 54.9
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.0e-51 208.0 277 46.6
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.9e-50 203.8 191 62.3
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.1e-45 188.0 289 44.6
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.4e-45 187.6 282 68.4
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.9e-42 177.2 228 58.8
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.2e-41 172.2 290 42.4
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.4e-40 170.2 260 45.8
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.3e-35 154.5 309 38.2
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 8.2e-33 145.2 304 58.6
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.1e-32 144.8 246 38.2
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.5e-31 141.0 273 52.7
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.6e-28 131.0 97 70.1
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.8e-27 127.5 247 36.4
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.7e-25 119.8 173 75.7
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.5e-23 114.4 97 67.0
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.5e-23 114.4 97 67.0
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.0e-19 101.7 160 82.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 4.4e-18 96.3 200 64.5
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.3e-17 94.7 156 80.8
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.1e-16 91.7 219 35.6
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.5e-10 71.2 50 72.0
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.5e-07 60.1 178 32.6


User provided reference genes

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