Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.4e-279 965.7 491 100.0
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 9.4e-273 943.0 491 97.1
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.4e-268 929.1 491 96.5
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 2.7e-259 898.3 491 93.1
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.5e-254 882.5 491 91.6
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.2e-228 795.0 491 82.7
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.5e-225 786.2 495 81.2
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 1.9e-225 785.8 491 80.4
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 2.5e-225 785.4 491 80.4
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.3e-225 785.0 494 81.6
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.3e-225 784.6 495 81.0
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 7.3e-225 783.9 493 80.7
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.6e-224 782.7 491 81.3
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.1e-224 782.3 441 88.4
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.7e-224 781.2 491 81.3
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.8e-223 779.2 491 80.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.8e-223 779.2 492 80.7
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 2.0e-222 775.8 490 80.2
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.0e-222 775.8 485 81.4
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 2.6e-222 775.4 491 80.0
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 3.4e-222 775.0 487 81.9
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 3.4e-222 775.0 492 79.5
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.2e-221 772.3 491 79.8
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.1e-220 770.0 439 87.0
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 3.2e-220 768.5 491 78.8
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.4e-220 767.7 492 78.3
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.6e-219 766.1 434 88.5
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.3e-218 763.1 466 82.2
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 3.0e-218 761.9 439 87.5
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 3.9e-218 761.5 486 79.4
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.7e-218 760.4 436 86.9
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.9e-217 759.2 463 83.6
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.3e-217 758.4 436 86.5
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 3.3e-217 758.4 437 86.0
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 9.6e-217 756.9 491 78.6
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.1e-216 755.7 440 85.7
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 3.6e-216 755.0 449 84.0
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.6e-216 755.0 449 83.7
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 3.6e-216 755.0 439 85.9
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.1e-215 753.4 441 85.5
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.4e-215 753.1 432 86.8
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 1.4e-215 753.1 462 81.4
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.8e-215 752.7 470 80.6
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 5.3e-215 751.1 441 84.6
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.2e-214 750.0 495 78.2
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 1.5e-214 749.6 437 84.7
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.0e-214 749.2 493 76.9
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 2.0e-214 749.2 449 84.2
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-214 748.4 435 86.0
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 3.4e-214 748.4 461 82.4
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.5e-214 748.0 474 79.5
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 7.6e-214 747.3 436 85.3
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 2.9e-213 745.3 466 79.8
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 2.9e-213 745.3 439 84.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.8e-213 745.0 436 85.8
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 4.9e-213 744.6 439 85.2
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.1e-212 743.4 443 83.5
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.1e-212 743.4 449 84.0
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.4e-212 743.0 437 83.5
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.4e-212 743.0 446 83.2
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.4e-212 743.0 465 80.0
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.9e-212 742.7 439 83.4
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.4e-212 742.3 443 82.2
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.4e-212 742.3 439 84.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 3.2e-212 741.9 437 83.5
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 3.2e-212 741.9 437 83.5
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 4.2e-212 741.5 441 82.8
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.4e-212 741.1 492 78.7
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 5.4e-212 741.1 439 82.7
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 7.1e-212 740.7 437 83.5
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 7.1e-212 740.7 437 83.5
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 7.1e-212 740.7 436 84.9
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 7.1e-212 740.7 443 82.6
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 9.3e-212 740.3 473 79.3
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.2e-211 740.0 443 82.4
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 1.2e-211 740.0 443 82.2
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.6e-211 739.6 443 82.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 2.1e-211 739.2 437 83.3
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.1e-211 739.2 436 83.5
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 4.6e-211 738.0 490 77.1
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 7.9e-211 737.3 494 77.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.3e-210 736.5 443 81.9
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.3e-210 736.5 443 81.9
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.8e-210 736.1 443 81.7
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.8e-210 736.1 485 76.5
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.3e-210 735.7 480 76.9
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 3.0e-210 735.3 441 81.9
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 3.0e-210 735.3 437 82.8
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 3.9e-210 734.9 438 82.9
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 5.1e-210 734.6 440 83.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 6.7e-210 734.2 439 82.7
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 3.3e-209 731.9 443 81.5
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 3.3e-209 731.9 435 83.2
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.3e-209 731.5 489 77.7
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 5.6e-209 731.1 493 75.5
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 5.6e-209 731.1 436 83.3
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 3.7e-208 728.4 487 76.4
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 3.7e-208 728.4 432 83.3
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.1e-207 726.9 437 81.9
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.4e-207 725.7 474 78.7
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.1e-207 725.3 436 82.8
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 4.0e-207 724.9 436 81.9
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 5.3e-207 724.5 437 81.7
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 9.0e-207 723.8 491 76.4
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.5e-206 723.0 503 73.8
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 9.9e-206 720.3 489 76.7
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.9e-205 718.0 431 81.7
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.9e-204 716.1 435 81.4
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 5.5e-204 714.5 431 81.9
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.6e-203 713.0 434 82.5
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 7.4e-201 704.1 431 80.5
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 4.8e-200 701.4 448 79.2
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.4e-199 699.9 437 78.9
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 8.4e-197 690.6 440 77.7
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.2e-195 686.8 413 82.6
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.2e-192 674.1 388 85.8
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.0e-186 657.1 439 76.1
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.9e-186 655.2 432 73.6
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.6e-182 642.5 432 73.1
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 3.4e-182 642.1 438 73.3
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 8.8e-178 627.5 427 74.7
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.5e-177 626.7 469 69.3
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 2.1e-171 606.3 427 71.0
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 8.0e-171 604.4 430 69.8
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.6e-169 599.4 359 83.0
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 3.1e-167 592.4 438 68.3
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.2e-160 569.7 484 65.7
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.7e-158 562.8 428 67.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.1e-151 538.9 318 84.9
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 4.5e-150 535.4 315 84.8
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 3.9e-125 452.6 300 78.0
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.0e-117 427.9 438 50.5
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 6.6e-117 425.2 258 82.2
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.5e-116 424.1 330 68.8
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.2e-113 414.5 233 86.7
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 4.4e-113 412.5 258 79.5
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.2e-111 406.4 258 78.3
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.6e-94 350.9 254 72.0
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.1e-91 340.5 405 53.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.2e-89 334.7 201 83.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 3.8e-88 329.7 182 89.0
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 2.5e-84 317.0 177 86.4
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.6e-75 287.7 228 68.4
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.6e-70 271.2 195 71.8
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 5.1e-69 266.2 423 40.2
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.2e-65 255.0 217 62.7
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.7e-64 251.1 223 61.4
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 6.5e-64 249.2 295 46.8
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.4e-63 248.1 217 61.3
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 3.2e-63 246.9 245 57.1
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 3.1e-58 230.3 122 89.3
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 7.0e-58 229.2 215 57.7
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.8e-50 204.5 116 86.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 3.7e-43 180.3 188 55.9
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.9e-39 167.9 89 91.0
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.7e-38 164.1 95 85.3
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.5e-31 141.0 160 51.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 3.7e-27 127.1 133 45.9
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 3.9e-24 117.1 136 50.0
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 9.5e-23 112.5 67 82.1
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.4e-21 108.6 83 60.2
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.5e-20 105.1 212 37.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.8e-20 103.2 125 49.6
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.2e-18 97.4 64 78.1
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 8.6e-16 89.4 122 45.9
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.5e-15 88.6 57 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.5e-15 87.8 66 68.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 4.0e-13 80.5 53 73.6
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 8.9e-13 79.3 45 86.7
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 3.7e-11 73.9 48 77.1
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.9e-10 71.6 46 76.1
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 2.4e-10 71.2 69 59.4
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 3.5e-09 67.4 69 59.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 2.3e-08 64.7 37 86.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 2.8e-06 57.8 31 80.6
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 2.8e-06 57.8 55 58.2
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 6.2e-06 56.6 58 55.2
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 8.1e-06 56.2 43 62.8


User provided reference genes

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