Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 4.4e-95 351.3 179 100.0
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.3e-67 260.0 145 95.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 1.4e-61 240.0 224 63.8
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.1e-50 203.8 119 90.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.7e-49 198.7 121 89.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.1e-48 195.3 120 88.3
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 3.4e-47 192.2 120 87.5
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 5.9e-47 191.4 119 86.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.0e-46 190.7 119 86.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.3e-46 190.3 122 82.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.2e-46 189.5 120 86.7
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.9e-46 189.1 109 90.8
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 6.5e-46 188.0 117 86.3
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 8.5e-46 187.6 118 87.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 8.5e-46 187.6 121 82.6
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 1.4e-45 186.8 121 85.1
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.9e-45 186.4 120 86.7
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.5e-45 186.0 121 83.5
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.5e-45 186.0 121 82.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.2e-45 185.7 120 85.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.2e-45 185.3 120 85.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.2e-45 185.3 120 85.0
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.5e-45 184.9 119 84.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 5.5e-45 184.9 119 84.9
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.4e-45 184.1 121 81.8
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.2e-44 183.7 113 88.5
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.6e-44 183.3 109 86.2
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.6e-44 183.3 119 84.9
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.6e-44 183.3 119 81.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.7e-44 182.6 146 70.5
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 3.6e-44 182.2 145 71.0
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 3.6e-44 182.2 119 83.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.6e-44 181.8 117 82.9
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 4.6e-44 181.8 109 85.3
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 6.1e-44 181.4 109 85.3
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 7.9e-44 181.0 121 81.8
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-43 180.6 119 81.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.0e-43 180.6 121 82.6
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.0e-43 180.6 109 87.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.0e-43 180.6 117 83.8
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-43 180.3 109 85.3
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.4e-43 180.3 119 83.2
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.8e-43 179.9 161 65.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.8e-43 179.9 117 82.1
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-43 179.5 108 85.2
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 2.3e-43 179.5 108 85.2
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.3e-43 179.5 120 81.7
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 3.9e-43 178.7 108 87.0
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 5.1e-43 178.3 123 78.9
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 5.1e-43 178.3 123 78.9
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 5.1e-43 178.3 107 84.1
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 5.1e-43 178.3 128 77.3
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 6.7e-43 177.9 122 79.5
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.1e-42 177.2 117 80.3
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.5e-42 176.8 106 84.9
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.5e-42 176.8 120 80.0
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.0e-42 176.4 123 78.0
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-42 176.4 124 77.4
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-42 176.4 122 78.7
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 2.0e-42 176.4 122 78.7
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.0e-42 176.4 123 78.0
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.5e-42 176.0 109 82.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.3e-42 175.3 116 81.9
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 9.7e-42 174.1 127 75.6
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.3e-41 173.7 121 79.3
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 3.7e-41 172.2 121 78.5
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 3.7e-41 172.2 123 74.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 3.7e-41 172.2 121 80.2
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.8e-41 171.8 101 88.1
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 6.3e-41 171.4 126 77.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.1e-40 170.6 101 86.1
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.1e-40 170.6 100 88.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-40 170.6 100 88.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-40 170.6 100 88.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-40 170.6 100 88.0
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.4e-40 170.2 120 77.5
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.4e-40 170.2 117 80.3
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.4e-40 170.2 117 80.3
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.4e-40 169.5 104 82.7
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 4.1e-40 168.7 100 87.0
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 4.1e-40 168.7 109 80.7
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 5.3e-40 168.3 121 76.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 6.9e-40 167.9 114 76.3
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.2e-39 167.2 104 80.8
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 1.5e-39 166.8 98 83.7
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.5e-39 166.8 116 77.6
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 4.5e-39 165.2 105 81.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.5e-39 165.2 129 69.8
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.9e-39 164.9 102 81.4
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 5.9e-39 164.9 118 77.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 7.7e-39 164.5 120 75.8
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 7.7e-39 164.5 117 75.2
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.3e-38 163.7 122 73.8
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.9e-38 162.5 117 74.4
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 6.5e-38 161.4 127 71.7
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.1e-37 160.6 106 76.4
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.4e-37 160.2 117 73.5
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.9e-37 159.8 106 81.1
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.9e-37 159.8 104 83.7
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.5e-37 159.5 118 72.9
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 7.2e-37 157.9 115 73.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 7.2e-37 157.9 117 71.8
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 7.2e-37 157.9 117 71.8
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 9.4e-37 157.5 117 71.8
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.6e-36 156.8 117 71.8
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.6e-36 156.8 109 70.6
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 2.1e-36 156.4 109 71.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 3.6e-36 155.6 120 71.7
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 4.7e-36 155.2 98 79.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 4.7e-36 155.2 117 72.6
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 7.9e-36 154.5 109 76.1
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 7.9e-36 154.5 117 70.9
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.3e-35 152.9 117 67.5
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 6.7e-35 151.4 117 69.2
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.5e-34 150.2 115 71.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.0e-34 149.8 116 72.4
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 3.3e-34 149.1 105 80.0
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 4.4e-34 148.7 96 78.1
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.7e-33 145.6 85 87.1
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 1.5e-31 140.2 107 71.0
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.9e-29 133.3 106 69.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.7e-28 128.6 103 66.0
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.2e-27 125.2 87 78.2
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 8.8e-27 124.4 83 80.7
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.0e-26 123.2 113 56.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.3e-25 120.6 107 59.8
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 4.1e-24 115.5 92 69.6
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 4.1e-24 115.5 92 69.6
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.3e-24 115.2 67 85.1
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 7.7e-23 111.3 69 81.2
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.0e-22 110.9 68 80.9
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-22 110.2 69 81.2
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.1e-21 107.5 70 78.6
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.2e-20 104.0 65 75.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 6.1e-20 101.7 98 51.0
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.4e-19 100.5 107 59.8
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-18 97.1 74 70.3
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.7e-17 92.4 85 62.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-17 92.0 73 68.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 4.8e-17 92.0 56 82.1
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.4e-16 90.5 57 78.9
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.1e-16 89.4 85 63.5
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 6.5e-14 81.6 87 52.9
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.2e-12 77.4 103 45.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.2e-12 77.4 117 45.3
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-12 76.6 82 56.1
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 3.0e-11 72.8 53 69.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 9.8e-10 67.8 60 56.7
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 8.3e-09 64.7 40 82.5
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 8.3e-09 64.7 120 34.2
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.4e-08 63.2 75 50.7
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 9.1e-08 61.2 103 42.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.2e-07 60.8 44 70.5
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.6e-07 60.5 63 54.0
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.7e-07 59.7 38 76.3
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 3.5e-07 59.3 96 42.7
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 1.7e-06 57.0 44 65.9
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 8.6e-06 54.7 44 63.6


User provided reference genes

Program Settings