Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 4.0e-169 598.6 450 100.0
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.9e-155 553.1 464 90.9
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 7.4e-139 498.0 450 89.1
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.8e-138 496.1 456 86.2
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.3e-107 392.9 391 78.8
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.8e-103 379.4 416 74.0
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 9.7e-99 364.8 452 68.6
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.4e-97 360.1 435 73.1
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 2.4e-97 360.1 415 74.5
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.8e-95 352.8 381 79.3
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.0e-95 352.4 381 79.5
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.5e-94 350.1 380 78.7
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.5e-94 350.1 380 78.7
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.5e-94 350.1 381 79.0
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.0e-92 344.7 387 73.9
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.8e-92 344.0 389 78.1
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.3e-92 343.6 386 78.0
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 3.0e-92 343.2 383 73.6
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 8.8e-92 341.7 389 74.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 7.5e-91 338.6 385 78.2
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 3.7e-90 336.3 448 70.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.4e-89 334.3 387 71.3
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.8e-89 334.0 385 75.8
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 7.0e-89 332.0 383 75.2
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.2e-88 331.3 384 76.0
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.6e-88 330.9 410 71.2
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.0e-88 330.5 382 72.5
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.5e-88 329.7 456 66.2
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.5e-88 329.3 385 77.1
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 5.9e-88 328.9 388 70.6
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 7.7e-88 328.6 449 66.1
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.2e-87 327.0 454 67.8
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.2e-87 327.0 383 74.2
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.9e-87 326.6 385 71.2
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.1e-86 324.7 407 75.2
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.1e-86 324.7 454 67.8
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.2e-86 323.2 406 69.2
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 7.2e-86 322.0 454 67.4
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 9.4e-86 321.6 392 71.9
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.2e-85 321.2 385 73.2
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.2e-85 321.2 387 70.5
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.7e-85 320.1 382 72.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.6e-85 319.7 475 64.2
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 4.7e-85 319.3 412 69.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.0e-84 318.2 445 67.0
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.4e-84 317.8 427 68.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.4e-84 317.8 370 77.3
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.3e-84 317.0 380 76.6
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.3e-84 317.0 450 68.7
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 5.2e-84 315.8 381 73.2
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-83 314.7 446 65.7
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.0e-83 313.9 445 64.5
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 2.0e-83 313.9 447 66.2
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.0e-83 313.9 460 67.8
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 2.6e-83 313.5 442 64.7
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 4.4e-83 312.8 406 70.4
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 5.7e-83 312.4 455 62.2
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 5.7e-83 312.4 387 74.4
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-82 311.2 380 75.8
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.7e-82 310.8 387 72.1
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 4.8e-82 309.3 386 71.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 8.3e-82 308.5 383 72.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.4e-81 307.8 386 72.5
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.8e-81 307.4 422 69.9
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 3.1e-81 306.6 381 68.2
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.6e-80 304.3 390 71.5
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 2.0e-80 303.9 384 71.6
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.5e-80 302.8 322 75.2
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-79 301.2 354 73.7
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.3e-79 301.2 386 70.7
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 6.6e-79 298.9 351 73.2
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 8.6e-79 298.5 368 69.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 8.6e-79 298.5 320 75.3
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 8.6e-79 298.5 449 68.4
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.1e-78 298.1 392 70.9
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.5e-78 297.7 327 75.5
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.9e-78 297.4 384 74.2
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 9.5e-78 295.0 405 66.9
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 2.1e-77 293.9 382 69.6
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 4.7e-77 292.7 433 63.3
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 8.0e-77 292.0 390 65.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.0e-76 291.6 391 68.5
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 5.2e-76 289.3 385 66.8
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 6.8e-76 288.9 385 70.1
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.5e-75 287.7 386 69.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.3e-74 282.3 446 63.0
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.1e-73 281.6 386 65.3
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.4e-73 280.4 388 68.3
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.1e-73 279.6 376 69.4
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.0e-73 278.9 388 68.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.0e-71 275.0 393 70.7
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.7e-71 274.2 190 68.4
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 8.6e-71 271.9 388 67.0
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.6e-69 267.7 417 63.8
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 6.1e-69 265.8 390 61.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.1e-69 265.8 372 69.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.4e-68 264.6 387 67.4
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 8.9e-68 261.9 388 67.8
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.5e-67 261.2 382 69.1
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.7e-66 257.7 347 67.7
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 3.7e-66 256.5 458 62.9
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 4.9e-66 256.1 385 65.2
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.1e-65 255.0 390 66.7
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.2e-65 253.4 389 65.6
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 5.4e-65 252.7 403 64.5
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 7.0e-65 252.3 399 63.4
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.7e-64 250.4 403 63.5
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-63 247.7 390 64.6
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.3e-63 247.3 395 65.1
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.3e-63 247.3 395 65.1
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-62 245.0 394 64.7
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.1e-62 245.0 394 64.7
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.1e-62 245.0 394 64.7
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.3e-62 243.0 378 64.3
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 4.3e-62 243.0 483 56.3
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 9.5e-62 241.9 387 62.8
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 9.5e-62 241.9 401 61.6
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 2.6e-59 233.8 389 66.8
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.6e-59 233.8 389 61.2
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.8e-59 232.6 392 60.5
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 7.5e-59 232.3 387 68.0
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-58 231.5 457 63.9
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.2e-58 230.7 459 61.9
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 6.4e-58 229.2 457 63.7
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.0e-55 220.3 383 66.8
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 5.1e-55 219.5 375 41.9
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.5e-54 217.2 453 54.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 4.7e-53 213.0 329 63.2
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.7e-50 204.5 387 64.6
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.1e-49 201.8 388 64.4
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 5.4e-49 199.5 284 76.8
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 7.1e-49 199.1 388 63.9
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 7.1e-49 199.1 388 63.9
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 4.6e-48 196.4 385 62.3
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 3.0e-47 193.7 378 64.6
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.5e-46 191.4 386 43.3
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.9e-46 191.0 394 55.1
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 8.1e-45 185.7 293 69.3
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.4e-44 184.9 271 71.6
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.5e-43 181.4 400 57.8
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.0e-43 181.0 342 53.2
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.1e-41 175.3 223 48.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.1e-41 175.3 372 61.6
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.4e-41 174.9 168 55.4
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.6e-40 171.4 330 63.9
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.5e-40 170.2 128 66.4
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.3e-39 168.3 190 49.5
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.1e-38 165.2 403 55.8
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 7.3e-38 162.5 401 57.9
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 6.6e-31 139.4 197 42.6
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.1e-30 138.7 407 44.7
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.5e-30 138.3 278 69.4
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.5e-30 138.3 408 52.7
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.3e-30 136.7 396 49.0
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.1e-28 132.1 258 67.1
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 5.4e-25 119.8 246 76.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 4.3e-22 110.2 111 64.9
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 6.2e-21 106.3 120 48.3
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.2e-18 97.8 89 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 6.5e-18 96.3 205 33.2
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 6.5e-18 96.3 249 58.2
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 2.5e-17 94.4 102 50.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.1e-16 91.3 172 41.3
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.3e-15 87.8 91 51.6
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.9e-12 76.3 86 52.3
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 3.4e-11 73.9 49 67.3
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 8.4e-10 69.3 49 63.3
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 3.0e-07 60.8 49 53.1
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.1e-06 58.9 48 52.1
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.5e-06 58.5 98 54.1


User provided reference genes

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