Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 2.3e-108 395.6 199 100.0
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 6.2e-98 360.9 199 94.0
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 5.6e-91 337.8 251 73.3
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 1.9e-83 312.8 187 87.7
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 1.6e-74 283.1 173 81.5
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 7.6e-72 274.2 189 74.6
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 3.8e-71 271.9 182 75.8
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 3.2e-70 268.9 203 68.5
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 3.2e-70 268.9 203 68.5
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 4.2e-70 268.5 202 69.8
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 4.2e-70 268.5 203 69.0
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 7.2e-70 267.7 200 68.5
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 2.7e-69 265.8 206 69.4
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 3.6e-69 265.4 169 76.9
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 3.6e-69 265.4 175 76.0
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 4.6e-69 265.0 169 79.9
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 1.8e-68 263.1 164 78.7
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 5.1e-68 261.5 164 77.4
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 1.1e-67 260.4 174 74.1
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 2.5e-67 259.2 173 74.0
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 3.3e-67 258.8 164 76.8
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 5.7e-67 258.1 164 77.4
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 7.4e-67 257.7 163 77.9
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 9.7e-67 257.3 173 77.5
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 1.3e-66 256.9 162 79.0
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 1.6e-66 256.5 204 68.1
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 3.7e-66 255.4 163 79.1
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 3.7e-66 255.4 181 70.2
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 3.7e-66 255.4 195 69.2
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 6.3e-66 254.6 182 69.8
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 1.1e-65 253.8 166 78.9
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 1.1e-65 253.8 158 75.9
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 1.1e-65 253.8 208 67.3
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 1.1e-65 253.8 208 67.3
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 1.4e-65 253.4 174 73.6
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 1.8e-65 253.1 172 74.4
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 1.8e-65 253.1 191 68.1
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 2.4e-65 252.7 162 77.8
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 2.4e-65 252.7 183 72.7
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 5.3e-65 251.5 165 74.5
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 9.1e-65 250.8 182 70.9
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 9.1e-65 250.8 165 74.5
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 1.2e-64 250.4 176 71.6
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 1.5e-64 250.0 174 71.8
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 2.6e-64 249.2 190 68.9
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 2.6e-64 249.2 178 71.3
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 3.4e-64 248.8 161 74.5
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 4.5e-64 248.4 155 80.0
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 4.5e-64 248.4 155 80.0
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 4.5e-64 248.4 155 80.0
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.0e-63 247.3 161 77.0
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 1.3e-63 246.9 162 74.7
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 3.8e-63 245.4 178 70.2
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 3.8e-63 245.4 153 76.5
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 8.5e-63 244.2 155 78.1
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.1e-62 243.8 152 79.6
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 1.4e-62 243.4 165 73.9
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 1.9e-62 243.0 151 79.5
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 4.2e-62 241.9 173 69.9
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 4.2e-62 241.9 156 78.8
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 5.5e-62 241.5 160 73.8
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 5.5e-62 241.5 175 73.1
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 7.2e-62 241.1 151 78.8
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 7.2e-62 241.1 161 75.2
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 1.2e-61 240.4 163 75.5
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 1.2e-61 240.4 155 77.4
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 2.7e-61 239.2 161 75.2
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 1.0e-60 237.3 162 72.8
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 1.4e-60 236.9 162 73.5
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 3.0e-60 235.7 187 66.8
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 6.7e-60 234.6 168 70.2
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 6.7e-60 234.6 160 71.2
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 3.3e-59 232.3 165 69.7
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 2.8e-58 229.2 139 77.7
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 4.8e-58 228.4 189 66.1
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 4.8e-58 228.4 189 66.1
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 6.3e-58 228.0 161 68.9
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 6.3e-58 228.0 124 86.3
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 6.3e-58 228.0 168 72.0
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 3.1e-57 225.7 181 66.3
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 5.3e-57 224.9 155 72.9
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 9.1e-57 224.2 162 67.9
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 3.4e-56 222.2 132 81.1
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 2.2e-55 219.5 150 72.0
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 8.5e-55 217.6 210 59.5
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 2.5e-54 216.1 152 70.4
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 3.2e-54 215.7 157 72.0
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 1.2e-53 213.8 151 68.2
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 1.0e-52 210.7 151 68.2
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 1.8e-52 209.9 151 66.2
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 3.0e-52 209.1 162 65.4
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 8.2e-50 201.1 151 62.9
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.6e-48 196.8 165 66.1
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 1.0e-47 194.1 208 58.2
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 2.0e-43 179.9 116 72.4
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 1.1e-41 174.1 158 60.8
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.6e-40 170.2 157 62.4
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 1.6e-40 170.2 124 71.0
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.6e-37 160.2 155 60.6
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 1.6e-37 160.2 102 75.5
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 9.8e-35 151.0 151 52.3
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 9.8e-35 151.0 116 61.2
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 7.7e-32 141.4 171 52.0
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 1.3e-31 140.6 172 50.6
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 1.7e-31 140.2 99 75.8
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 5.0e-31 138.7 79 75.9
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 3.6e-29 132.5 101 69.3
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 1.7e-26 123.6 156 41.7
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 1.1e-25 120.9 151 44.4
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-20 103.2 64 70.3
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 8.9e-20 101.3 152 44.1
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 4.6e-16 89.0 79 60.8
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 2.9e-10 69.7 42 78.6


User provided reference genes

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