Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 7.9e-238 826.6 394 100.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 4.2e-223 777.7 421 90.0
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 8.5e-216 753.4 422 87.7
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 1.6e-201 706.1 421 82.2
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 4.6e-169 598.2 391 72.6
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 8.6e-168 594.0 411 68.9
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.1e-167 593.6 419 69.9
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 4.7e-166 588.2 404 71.0
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 4.7e-166 588.2 409 69.7
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 5.2e-165 584.7 413 69.5
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.0e-164 582.8 409 69.9
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 2.6e-164 582.4 402 70.4
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 2.6e-164 582.4 405 70.9
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.2e-163 579.3 389 71.7
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 4.9e-163 578.2 405 71.1
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 1.1e-162 577.0 400 70.2
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 3.2e-162 575.5 405 70.6
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 4.1e-162 575.1 409 68.5
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 9.2e-162 573.9 399 70.9
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 9.2e-162 573.9 413 69.0
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.2e-161 573.5 416 67.5
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 6.0e-161 571.2 418 67.0
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.0e-161 571.2 415 68.9
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 6.6e-160 567.8 411 69.1
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 6.6e-160 567.8 407 66.1
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 8.6e-160 567.4 420 66.7
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.5e-159 566.6 398 67.8
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.1e-157 560.5 406 67.5
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.1e-157 560.5 403 68.0
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 1.4e-157 560.1 423 66.0
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.8e-157 559.7 426 64.3
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 3.1e-157 558.9 410 66.3
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 3.1e-157 558.9 412 66.7
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 6.9e-157 557.8 410 67.1
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 6.9e-157 557.8 393 69.2
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 4.4e-156 555.1 418 66.7
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 9.9e-156 553.9 392 67.3
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 9.9e-156 553.9 417 64.3
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.3e-155 553.5 405 66.2
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.7e-155 553.1 404 66.3
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.7e-155 553.1 390 67.7
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 1.7e-155 553.1 375 68.8
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.2e-155 552.7 398 67.3
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 4.9e-155 551.6 412 65.3
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 4.9e-155 551.6 417 64.7
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 6.4e-155 551.2 418 65.1
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 6.4e-155 551.2 391 67.8
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.1e-154 550.4 420 67.4
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.4e-154 550.1 410 65.6
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.9e-154 549.7 390 68.7
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 3.2e-154 548.9 410 65.6
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 4.2e-154 548.5 396 67.2
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 4.2e-154 548.5 389 68.4
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 5.4e-154 548.1 373 70.0
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 5.4e-154 548.1 377 69.5
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 5.4e-154 548.1 415 65.1
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 7.1e-154 547.7 418 63.9
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 7.1e-154 547.7 402 68.7
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 4.6e-153 545.0 374 69.8
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.8e-153 544.3 386 68.4
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 2.3e-152 542.7 404 64.9
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.0e-152 542.3 450 61.8
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 3.9e-152 542.0 391 66.5
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 3.9e-152 542.0 391 66.5
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.9e-152 542.0 416 66.1
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 3.9e-152 542.0 405 66.4
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 8.7e-152 540.8 415 63.9
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 8.7e-152 540.8 416 63.5
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 3.3e-151 538.9 414 63.8
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 3.3e-151 538.9 402 65.2
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.1e-150 536.2 388 67.3
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.1e-150 536.2 430 63.7
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.8e-149 533.1 399 66.4
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 7.6e-148 527.7 371 69.3
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.3e-147 526.9 458 60.5
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.7e-147 526.6 415 63.6
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.1e-146 523.9 419 64.0
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.9e-146 523.1 413 61.5
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 5.4e-146 521.5 349 71.9
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.0e-144 517.3 404 63.1
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.3e-144 516.9 382 66.8
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.3e-142 510.4 381 65.1
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.9e-141 504.6 427 61.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.6e-137 493.4 355 66.5
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.1e-135 487.3 416 59.9
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.6e-134 483.4 423 59.1
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 8.2e-134 481.1 398 59.0
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.2e-132 477.2 415 59.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.3e-127 459.1 397 60.2
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.1e-125 454.1 339 64.3
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.0e-123 447.6 370 60.3
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.3e-123 447.2 394 54.3
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.4e-122 443.7 382 60.5
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 9.3e-122 441.0 381 56.4
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.1e-113 413.3 251 77.3
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 3.6e-113 412.5 410 52.7
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.0e-112 411.0 361 55.7
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.4e-112 410.6 279 70.6
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 5.0e-107 392.1 291 68.4
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 8.0e-105 384.8 303 63.0
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 9.1e-101 371.3 376 49.7
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.0e-99 367.9 377 49.3
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 7.0e-85 318.5 454 43.8
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 6.8e-80 302.0 225 64.9
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 6.8e-80 302.0 245 58.0
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.6e-79 300.1 225 65.8
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.4e-79 299.3 170 80.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.4e-79 299.3 170 80.0
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 1.5e-71 274.2 365 41.6
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.6e-68 262.7 155 80.6
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-67 261.2 190 66.3
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.3e-67 261.2 254 55.9
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.6e-65 254.2 395 38.0
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 2.6e-55 220.3 189 61.9
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.5e-50 203.8 130 78.5
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 5.6e-50 202.6 130 69.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.2e-45 185.3 102 81.4
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 6.2e-41 172.6 104 75.0
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.8e-39 166.0 92 81.5
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.6e-39 165.6 114 70.2
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 4.9e-38 162.9 144 57.6
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 1.6e-36 157.9 89 76.4
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 4.6e-36 156.4 307 33.2
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 7.6e-31 139.0 104 59.6
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 2.7e-28 130.6 123 57.7
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 7.1e-21 105.9 208 38.0
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 3.7e-17 93.6 53 75.5
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 6.2e-17 92.8 91 50.5
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 5.1e-11 73.2 350 24.6
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.5e-10 71.6 342 23.7
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 3.7e-09 67.0 66 53.0
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 8.2e-09 65.9 349 23.2
TAR376G0761 Trochodendron aralioides HOM05D003825 ORTHO05D004491 1.4e-08 65.1 249 21.7
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.8e-08 64.7 341 22.3
AUR62034587 Chenopodium quinoa HOM05D002999 ORTHO05D003137 3.1e-08 63.9 367 22.1
Aa31LG8G13600 Aethionema arabicum HOM05D003825 ORTHO05D004491 6.9e-08 62.8 272 21.0
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 9.0e-08 62.4 250 23.2
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 1.5e-07 61.6 249 21.7
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 1.5e-07 61.6 222 23.4
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 1.5e-07 61.6 222 23.4
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.5e-07 61.6 342 21.6
ECA236G2533 Erigeron canadensis HOM05D003825 ORTHO05D004491 3.4e-07 60.5 218 24.3
Lsat_1_v5_gn_7_89161 Lactuca sativa HOM05D003825 ORTHO05D004491 4.5e-07 60.1 249 21.7
Lalb_Chr02g0142981 Lupinus albus HOM05D002999 ORTHO05D003137 4.5e-07 60.1 342 23.1
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 4.5e-07 60.1 249 20.9
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 4.5e-07 60.1 153 32.0
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 5.9e-07 59.7 250 22.0
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 5.9e-07 59.7 249 22.5
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 5.9e-07 59.7 250 22.0
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 5.9e-07 59.7 215 23.3
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 1.0e-06 58.9 249 22.5
Cpa.g.sc62.142 Carica papaya HOM05D003825 ORTHO05D004491 1.0e-06 58.9 254 23.2
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 1.3e-06 58.5 244 22.5
arahy.Tifrunner.gnm1.ann1.53VILX Arachis hypogaea HOM05D003825 ORTHO05D004491 1.3e-06 58.5 249 22.1
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 1.3e-06 58.5 250 22.0
Lalb_Chr03g0025731 Lupinus albus HOM05D003825 ORTHO05D004491 1.3e-06 58.5 216 24.1
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 1.7e-06 58.2 249 22.5
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 1.7e-06 58.2 249 22.5
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 1.7e-06 58.2 249 22.9
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 2.9e-06 57.4 244 22.1
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 3.8e-06 57.0 117 34.2
arahy.Tifrunner.gnm1.ann1.SA4SRM Arachis hypogaea HOM05D003825 ORTHO05D004491 5.0e-06 56.6 249 21.7
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 5.0e-06 56.6 248 22.2
Thhalv10025475m.g Eutrema salsugineum HOM05D003825 ORTHO05D004491 5.0e-06 56.6 249 22.5
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 6.5e-06 56.2 249 22.1
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 6.5e-06 56.2 249 22.1
BraA03t15368Z Brassica rapa HOM05D003825 ORTHO05D004491 6.5e-06 56.2 249 23.3
DCAR_001583 Daucus carota HOM05D003825 ORTHO05D004491 8.5e-06 55.8 215 23.3


User provided reference genes

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