Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.8e-67 257.7 128 100.0
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.0e-53 213.4 111 94.6
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.7e-43 178.3 111 79.3
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 4.1e-42 174.9 116 75.9
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 1.9e-23 112.8 115 55.7
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.2e-22 110.2 118 47.5
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.2e-22 110.2 126 48.4
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.1e-22 109.4 124 46.8
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.6e-22 108.6 115 46.1
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 4.7e-22 108.2 122 45.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.1e-22 107.8 122 47.5
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 6.1e-22 107.8 108 50.9
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 8.0e-22 107.5 114 49.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-21 105.9 115 45.2
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.3e-21 105.9 114 48.2
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.0e-21 105.5 114 48.2
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.0e-21 105.5 114 48.2
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.0e-21 105.5 114 48.2
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 5.2e-21 104.8 132 45.5
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.7e-21 104.4 109 46.8
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 6.7e-21 104.4 114 51.8
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 1.1e-20 103.6 115 47.0
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.1e-20 103.6 114 45.6
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 4.4e-20 101.7 114 47.4
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 5.7e-20 101.3 114 47.4
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 7.4e-20 100.9 131 45.8
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 7.4e-20 100.9 113 42.5
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 9.7e-20 100.5 116 48.3
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-19 99.4 126 45.2
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.8e-19 99.0 115 50.4
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 2.8e-19 99.0 114 45.6
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.7e-19 98.6 117 47.0
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 3.7e-19 98.6 111 46.8
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.8e-19 98.2 112 43.8
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.8e-19 98.2 111 45.0
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 6.3e-19 97.8 107 45.8
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 8.2e-19 97.4 117 47.0
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 8.2e-19 97.4 112 44.6
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 1.8e-18 96.3 121 46.3
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 5.3e-18 94.7 126 46.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.6e-17 93.2 112 43.8
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.6e-17 92.4 112 42.9
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.7e-17 90.9 112 42.0
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.3e-16 90.1 112 43.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-16 89.7 112 42.0
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.2e-16 89.4 110 45.5
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 2.9e-16 89.0 112 42.9
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.1e-15 87.0 112 41.1
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.1e-15 87.0 106 42.5
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.9e-15 86.3 119 43.7
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 2.5e-15 85.9 113 44.2
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.2e-15 85.5 121 43.8
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.2e-15 85.5 104 43.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 3.2e-15 85.5 110 43.6
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 5.5e-15 84.7 123 41.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 9.4e-15 84.0 121 43.8
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 3.6e-14 82.0 125 37.6
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.7e-14 81.6 112 43.8
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 3.0e-13 79.0 107 43.0
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.2e-12 77.0 107 44.9
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.2e-12 77.0 107 43.0
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.0e-12 76.3 108 38.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.6e-12 75.9 130 40.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 3.4e-12 75.5 108 38.0
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 5.7e-12 74.7 96 49.0
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 5.7e-12 74.7 105 42.9
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 7.5e-12 74.3 106 38.7
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 7.5e-12 74.3 108 42.6
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 9.8e-12 73.9 109 36.7
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.7e-11 73.2 108 42.6
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 3.7e-11 72.0 107 43.9
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.8e-11 71.6 92 43.5
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 4.8e-11 71.6 112 43.8
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 8.3e-11 70.9 126 40.5
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.8e-10 69.7 108 37.0
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.8e-10 69.7 108 37.0
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.4e-10 69.3 112 35.7
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 3.1e-10 68.9 116 38.8
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.1e-10 68.9 106 38.7
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.1e-10 68.9 109 38.5
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.1e-10 68.9 112 36.6
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 3.1e-10 68.9 115 40.0
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.1e-10 68.6 114 40.4
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 4.1e-10 68.6 117 39.3
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 1.2e-09 67.0 114 39.5
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.6e-09 66.6 114 38.6
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.0e-09 66.2 121 35.5
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.0e-09 66.2 114 38.6
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.0e-09 66.2 110 38.2
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 2.7e-09 65.9 131 37.4
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-09 65.9 105 38.1
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.7e-09 65.9 108 37.0
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.7e-09 65.9 110 38.2
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.5e-09 65.5 107 38.3
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 3.5e-09 65.5 117 34.2
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 7.7e-09 64.3 110 37.3
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 7.7e-09 64.3 107 41.1
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.3e-08 63.5 109 38.5
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.3e-08 63.5 109 36.7
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.7e-08 63.2 118 36.4
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.2e-08 62.8 118 38.1
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.8e-08 62.0 105 36.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 3.8e-08 62.0 121 38.8
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 5.0e-08 61.6 109 33.9
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 5.0e-08 61.6 110 40.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 5.0e-08 61.6 132 34.1
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 6.5e-08 61.2 131 32.8
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 8.5e-08 60.8 95 40.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 8.5e-08 60.8 125 32.8
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.5e-08 60.8 122 33.6
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.1e-07 60.5 115 36.5
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.1e-07 60.5 127 33.1
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.1e-07 60.5 112 38.4
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.1e-07 60.5 105 34.3
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 2.5e-07 59.3 111 34.2
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.5e-07 59.3 114 33.3
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-07 59.3 114 33.3
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 3.2e-07 58.9 118 35.6
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 3.2e-07 58.9 118 35.6
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 3.2e-07 58.9 118 35.6
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.2e-07 58.9 116 38.8
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 3.2e-07 58.9 121 33.1
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.2e-07 58.9 113 35.4
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.2e-07 58.9 113 35.4
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 5.5e-07 58.2 91 38.5
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 5.5e-07 58.2 111 35.1
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-06 56.6 112 36.6
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.1e-06 56.2 120 35.0
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.7e-06 55.8 107 41.1
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.7e-06 55.8 105 31.4
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 8.0e-06 54.3 115 33.0
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 8.0e-06 54.3 131 32.8
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 8.0e-06 54.3 113 33.6
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 8.0e-06 54.3 118 33.9
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 8.0e-06 54.3 107 33.6


User provided reference genes

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