Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 6.2e-269 930.2 482 100.0
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.7e-234 815.8 445 94.2
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.6e-192 675.2 418 83.5
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 9.9e-158 560.8 425 68.2
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 4.2e-156 555.4 422 67.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 9.3e-156 554.3 417 68.6
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.4e-151 540.4 416 67.3
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.4e-151 540.4 425 65.2
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.4e-148 530.4 415 66.0
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 7.9e-147 524.6 438 61.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.3e-146 523.9 417 63.1
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.9e-146 522.3 447 60.2
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 8.7e-146 521.2 446 61.4
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 8.7e-146 521.2 437 63.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.1e-145 520.8 428 63.3
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.9e-145 520.0 424 63.2
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 4.3e-145 518.8 414 62.1
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.3e-145 518.8 485 59.0
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.3e-144 517.3 435 63.2
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.1e-144 516.5 415 65.1
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.7e-144 515.8 415 65.3
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 3.7e-144 515.8 415 65.3
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 6.2e-144 515.0 476 58.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 6.2e-144 515.0 414 65.7
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.4e-143 513.8 456 62.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.0e-143 512.3 449 60.6
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.5e-142 510.4 417 61.6
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.5e-142 510.4 497 57.9
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 3.4e-142 509.2 444 59.7
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.3e-141 507.3 466 60.3
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 3.8e-141 505.8 416 61.1
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.4e-140 503.8 420 62.1
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.5e-140 503.1 428 60.3
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.2e-139 500.7 424 61.6
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.0e-138 497.7 444 59.2
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.0e-138 497.7 479 57.2
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.5e-137 493.8 410 61.0
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 7.4e-137 491.5 491 55.8
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 7.4e-137 491.5 444 58.8
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 9.6e-137 491.1 452 60.0
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 4.8e-136 488.8 425 60.9
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 8.2e-136 488.0 458 60.0
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.8e-135 486.9 428 60.3
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 7.6e-134 481.5 425 59.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.7e-133 480.3 422 58.3
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 2.9e-133 479.6 423 59.3
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 2.9e-133 479.6 422 60.0
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 6.5e-133 478.4 425 59.1
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 2.1e-131 473.4 494 54.9
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 7.9e-131 471.5 418 58.9
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.8e-130 470.3 429 58.0
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.3e-130 469.9 437 57.2
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 3.0e-130 469.5 423 59.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 3.0e-130 469.5 484 53.5
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.9e-130 469.2 514 50.2
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 3.9e-130 469.2 484 53.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.5e-129 467.2 432 57.9
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.5e-129 466.5 495 52.7
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.5e-129 466.5 451 55.4
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.7e-129 465.3 473 54.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 9.7e-129 464.5 424 58.3
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 1.3e-128 464.2 439 55.8
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.8e-128 463.0 477 54.3
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 8.2e-128 461.5 516 49.8
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.8e-127 460.3 468 54.7
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.1e-127 459.5 424 56.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 4.1e-127 459.1 451 54.5
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 4.5e-126 455.7 451 55.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 5.9e-126 455.3 418 58.4
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.4e-124 450.7 533 50.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.2e-123 447.6 434 54.8
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.6e-123 447.2 456 55.0
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.1e-123 446.8 460 51.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.1e-123 446.8 426 55.4
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.0e-122 444.5 417 56.8
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.4e-122 444.1 489 51.5
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.3e-122 443.4 426 54.9
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 8.8e-122 441.4 416 59.9
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 9.7e-121 438.0 547 47.5
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.3e-120 437.6 437 55.6
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 6.3e-120 435.3 434 56.0
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.5e-118 430.6 469 50.3
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 2.6e-118 429.9 232 86.6
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.5e-116 423.3 307 65.8
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 7.9e-115 418.3 457 49.5
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 7.0e-111 405.2 268 70.5
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 9.1e-111 404.8 527 45.4
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.2e-110 404.4 322 61.5
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 8.5e-109 398.3 255 85.9
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.8e-106 390.6 197 92.9
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 5.2e-106 389.0 424 50.7
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.1e-105 387.9 273 68.1
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.8e-104 383.3 446 47.3
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 3.7e-104 382.9 299 60.2
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.1e-103 381.3 512 45.5
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.8e-103 380.6 264 64.8
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.5e-102 375.9 268 66.0
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 4.5e-102 375.9 276 65.9
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 9.4e-100 368.2 269 65.1
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-99 367.9 293 61.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.6e-99 367.5 268 62.3
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.2e-98 362.5 303 57.1
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 5.7e-97 359.0 299 56.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 2.2e-96 357.1 546 41.4
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-95 354.8 269 63.9
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.4e-95 354.4 278 62.9
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 3.5e-94 349.7 334 55.7
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 6.1e-91 339.0 266 61.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-89 334.3 266 57.9
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 2.0e-89 334.0 321 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 7.0e-87 325.5 247 62.8
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 4.7e-83 312.8 266 57.5
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.4e-82 311.2 278 55.0
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.7e-72 276.6 173 70.5
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 4.9e-72 276.2 189 66.1
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.9e-71 274.2 278 49.6
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-70 271.6 269 50.6
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.8e-58 229.2 269 47.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.6e-57 227.3 226 49.6
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 4.6e-54 216.5 267 43.8
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.8e-54 215.7 269 45.7
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 2.8e-51 207.2 137 67.9
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.1e-50 205.3 278 42.8
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.4e-50 204.9 174 54.0
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 7.6e-49 199.1 212 56.1
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.7e-46 190.7 133 64.7
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.0e-45 187.2 218 53.2
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.1e-45 186.4 302 35.8
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 4.8e-43 179.9 108 74.1
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.2e-43 179.5 299 36.5
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.1e-42 178.7 137 60.6
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.9e-39 167.9 302 36.8
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.0e-30 136.3 159 45.3
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.1e-28 132.1 368 28.5
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 4.3e-28 130.2 97 60.8
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 4.8e-27 126.7 119 52.9
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 8.1e-27 125.9 75 74.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.4e-26 124.4 314 29.3
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 1.9e-23 114.8 260 36.9
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 6.2e-19 99.8 147 54.4
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 3.0e-13 80.9 167 35.9
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 3.0e-13 80.9 118 39.0
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.7e-13 79.3 53 66.0
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.9e-10 69.7 104 37.5
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.5e-09 68.6 63 50.8
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 6.5e-08 63.2 61 47.5
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 4.2e-07 60.5 62 50.0
Cre12.g521600 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D145370 5.5e-07 60.1 220 27.7


User provided reference genes

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