Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 3.3e-289 997.7 504 100.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 2.7e-57 227.3 173 72.3
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 2.5e-47 194.1 102 96.1
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 3.1e-45 187.2 102 91.2
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 5.9e-44 183.0 102 89.2
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 5.5e-42 176.4 102 84.3
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 7.2e-42 176.0 105 82.9
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 7.2e-42 176.0 102 85.3
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 9.4e-42 175.6 102 85.3
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 6.1e-41 172.9 102 82.4
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 7.9e-41 172.6 102 85.3
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.0e-40 172.2 102 83.3
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.0e-40 172.2 102 82.4
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 1.4e-40 171.8 102 83.3
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.4e-40 171.8 102 83.3
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 1.4e-40 171.8 102 82.4
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.8e-40 171.4 100 85.0
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 3.0e-40 170.6 102 83.3
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 3.0e-40 170.6 102 84.3
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 5.1e-40 169.9 102 83.3
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 6.7e-40 169.5 102 82.4
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 6.7e-40 169.5 105 79.0
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 8.8e-40 169.1 102 80.4
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.1e-39 168.7 102 81.4
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 2.0e-39 167.9 102 80.4
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 2.0e-39 167.9 102 80.4
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 2.0e-39 167.9 104 78.8
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 2.6e-39 167.5 102 80.4
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.6e-39 167.5 105 79.0
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 2.6e-39 167.5 103 78.6
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 2.6e-39 167.5 103 78.6
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 3.3e-39 167.2 97 83.5
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 3.3e-39 167.2 97 83.5
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 4.4e-39 166.8 102 83.3
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 4.4e-39 166.8 102 83.3
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 4.4e-39 166.8 94 86.2
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 5.7e-39 166.4 102 80.4
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 7.4e-39 166.0 102 79.4
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 7.4e-39 166.0 102 79.4
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 7.4e-39 166.0 105 78.1
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 7.4e-39 166.0 105 79.0
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 7.4e-39 166.0 102 82.4
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 7.4e-39 166.0 102 82.4
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 9.7e-39 165.6 94 88.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-38 165.2 102 79.4
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.3e-38 165.2 102 79.4
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.3e-38 165.2 97 83.5
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.3e-38 165.2 97 82.5
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.7e-38 164.9 97 82.5
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 2.2e-38 164.5 102 80.4
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 2.8e-38 164.1 102 79.4
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.8e-38 164.1 105 76.2
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.8e-38 164.1 105 76.2
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 2.8e-38 164.1 102 79.4
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.8e-38 164.1 102 80.4
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 3.7e-38 163.7 102 77.5
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 3.7e-38 163.7 102 77.5
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.8e-38 163.3 103 79.6
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 4.8e-38 163.3 97 81.4
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 6.3e-38 162.9 100 78.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 6.3e-38 162.9 103 76.7
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 6.3e-38 162.9 97 80.4
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.1e-37 162.2 98 80.6
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.1e-37 162.2 97 81.4
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-37 162.2 102 77.5
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.1e-37 162.2 98 81.6
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.1e-37 162.2 102 79.4
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-37 161.4 102 77.5
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.8e-37 161.4 97 80.4
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 2.4e-37 161.0 101 78.2
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.4e-37 161.0 97 79.4
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 3.1e-37 160.6 98 79.6
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 3.1e-37 160.6 102 77.5
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 3.1e-37 160.6 102 77.5
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 4.1e-37 160.2 102 75.5
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 4.1e-37 160.2 102 77.5
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 5.3e-37 159.8 102 77.5
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 5.3e-37 159.8 102 75.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 5.3e-37 159.8 102 75.5
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 5.3e-37 159.8 103 75.7
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 6.9e-37 159.5 101 77.2
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.2e-36 158.7 99 77.8
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.2e-36 158.7 102 76.5
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.2e-36 158.7 102 76.5
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.5e-36 158.3 102 74.5
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.6e-36 157.5 102 77.5
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 3.4e-36 157.1 101 74.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.4e-36 157.1 101 74.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.4e-36 157.1 101 74.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 3.4e-36 157.1 95 77.9
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 4.5e-36 156.8 99 76.8
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 5.9e-36 156.4 99 75.8
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 5.9e-36 156.4 104 70.2
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 5.9e-36 156.4 98 78.6
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 7.7e-36 156.0 102 74.5
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.0e-35 155.6 98 76.5
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.0e-35 155.6 101 73.3
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.0e-35 155.6 102 74.5
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.7e-35 154.8 102 74.5
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.7e-35 154.8 101 72.3
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 2.9e-35 154.1 98 76.5
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.9e-35 154.1 101 72.3
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 5.0e-35 153.3 99 73.7
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 5.0e-35 153.3 102 72.5
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.9e-34 151.4 97 75.3
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.9e-34 151.4 101 72.3
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.5e-34 151.0 97 75.3
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 4.2e-34 150.2 98 76.5
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 4.2e-34 150.2 98 76.5
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 4.2e-34 150.2 115 67.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 7.2e-34 149.4 96 76.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 7.2e-34 149.4 97 75.3
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.4e-34 149.1 103 73.8
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 2.7e-33 147.5 102 70.6
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 4.7e-33 146.7 102 68.6
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 4.7e-33 146.7 97 74.2
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 6.1e-33 146.4 99 74.7
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.8e-32 144.8 99 73.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 3.0e-32 144.1 99 73.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 5.2e-32 143.3 97 73.2
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 2.6e-31 141.0 99 71.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 2.6e-31 141.0 99 71.7
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.9e-27 127.5 114 62.3
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.5e-26 125.2 114 61.4
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 8.0e-25 119.4 160 45.0
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 2.3e-24 117.9 74 74.3
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.6e-23 114.4 78 67.9
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 8.2e-22 109.4 69 75.4
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.8e-21 108.2 69 72.5
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 2.4e-21 107.8 68 72.1
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.4e-21 107.8 90 61.1
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-20 105.1 65 72.3
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 2.7e-20 104.4 73 64.4
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 3.5e-20 104.0 73 64.4
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 3.5e-20 104.0 73 64.4
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 4.5e-20 103.6 102 57.8
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.3e-19 102.1 131 44.3
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 2.2e-19 101.3 61 80.3
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 3.8e-19 100.5 85 57.6
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 5.5e-18 96.7 85 57.6
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.3e-14 82.8 103 50.5
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 5.4e-13 80.1 54 72.2
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.2e-12 79.0 83 48.2
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 5.0e-11 73.6 69 49.3
Os01g0209901 Oryza sativa ssp. japonica HOM05D031549 ORTHO05D037186 1.1e-10 72.4 250 26.0
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 2.5e-10 71.2 74 54.1
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 4.0e-08 63.9 85 49.4
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.2e-06 58.2 101 35.6


User provided reference genes

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